Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3254 ATGATTTTTCCCTATAATTATATTAAGCGGTTTGGCCCATTTTTTCCTTTCTCGAGAGCAACTCTCCTAACTCACTCCTTCGCTTCAAAAGCTGCGAATTCCAGAAATCCCTCCTTTCCTTCCAAAACCCTAAAACCCTTTCCCCATTCTGTTCTTCAGAGATTCACTTCAATCTCTGAACCACACGCTCGCTTTCGAGGAGTGAAAAGAGAAGTGGCTATGGCTGGGAAAGAAGATAACCGTATATTTGTGGGTGGCTTGGCTTGGGACGTAACGGAGCGTCAGCTTGAGCATGCCTTTAGTCGTTGCGGCAAAGTTATCGAATGCCAGATCATGTTGGAAAGGGACACAGGTCGTCCACGCGGATTTGGGTTTATCACATTTGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGACATGCATGGACGAGAGCTTGGTGACCGCATTATCTCTGTCAACAGGGCCCAGCCCAAAATGGGGTCAGATGATCTAGACCATGGTTACTCATCAGGTGGAGGCAGAGGAAATTATGGGGTGGGAGGCAGAGTAGGACAGGATGACTGCTTCAAATGTGGGCGACCTGGACATTGGGCCCGAGATTGTCCTTTGGCTGGAGGAGGTCGTGGTGGGGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGTCATGGGGATCGCCTTGGTGAACGTGATAGATTTATTGATGATCGTTATGATGGAGGGCGTTTTGGAGATAGGGAACGCTTTGACAGCCGGGATGGTAAATATGGCAACCGTGATCACTATTATAGTGATAGGTACCGGGCTAGTGGAGATCGGTTTGCTAACGATTCATATGGTGGTTCAGACCGTTACCCACAAAATAGTTATGGGAAAGATAGAGCCTATGATAGGTATGGCAGTGCAAGGGGTAGTGACAGGTATGGCGGTGGAGCACCAGCACGAGACCAAGGTAGGAGTTTTAGGGGTGCCCGACGTGGTGGTCCGTATGATCGTCCAAGCAGGGGTGGCCGTCCATCTTCATTCGAACGGTACTGA 1047 0.4947 MIFPYNYIKRFGPFFPFSRATLLTHSFASKAANSRNPSFPSKTLKPFPHSVLQRFTSISEPHARFRGVKREVAMAGKEDNRIFVGGLAWDVTERQLEHAFSRCGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKDMHGRELGDRIISVNRAQPKMGSDDLDHGYSSGGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGSFSSRPRFGGAGGHGDRLGERDRFIDDRYDGGRFGDRERFDSRDGKYGNRDHYYSDRYRASGDRFANDSYGGSDRYPQNSYGKDRAYDRYGSARGSDRYGGGAPARDQGRSFRGARRGGPYDRPSRGGRPSSFERY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3254 348 MobiDBLite consensus disorder prediction 276 348 - -
Mibi02g3254 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Mibi02g3254 348 MobiDBLite consensus disorder prediction 322 348 - -
Mibi02g3254 348 FunFam glycine-rich RNA-binding protein RZ1C 74 186 - -
Mibi02g3254 348 ProSiteProfiles Zinc finger CCHC-type profile. 189 203 IPR001878 GO:0003676|GO:0008270
Mibi02g3254 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Mibi02g3254 348 SUPERFAMILY RNA-binding domain, RBD 75 183 IPR035979 GO:0003676
Mibi02g3254 348 Gene3D - 186 211 - -
Mibi02g3254 348 SUPERFAMILY Retrovirus zinc finger-like domains 170 209 IPR036875 GO:0003676|GO:0008270
Mibi02g3254 348 Pfam Zinc knuckle 189 203 IPR001878 GO:0003676|GO:0008270
Mibi02g3254 348 Gene3D - 57 185 IPR012677 -
Mibi02g3254 348 MobiDBLite consensus disorder prediction 207 233 - -
Mibi02g3254 348 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Mibi02g3254 348 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 77 340 - -
Mibi02g3254 348 SMART rrm1_1 81 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3254 Mibi-ChrMibi02 57882744 57887713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3254 82 161 C2H2 Transcription Factor Family AT2G19380 40.000 7.51e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g3254 02 57882744 57887713 Mibi02g3254 02 57882744 57887713 ECH