Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3218 ATGGGACCGAATTTCATGGATGAGATAGACTGTGGGAGTTTCTTCGACCACATTGACGACCTCCTCGATTTCCCCTCCGAAGATGTCGACGCCGCCGCTCTGCCTTCTTCAACCGCCGCCGTCAATTGCGACTCCTCCTCCTTCCCCTCCGTCTGGCCCGCCGACTCCGACTCCTTGCCTTGCTCCGACCTCTCCGCCCACCTCCCCGTTCCGTATGAAGACTTTGTTCAATTGGAATGGCTTTCAAATTTTGTGGAGGATTCTTTCACTGCTGGTGGAAGCCTCACCATGAAGAAAATGGAGCAATCTCAATCTCAATCTCAATCTTGTGTCACCAAAAGTAATGACTCAGCACACACCCAATTCCAGACTTCCAGCCCGGTTTCCGTCCTTGAGAGCAGCAGCTCCTGCTCCGGGGAGAAGCCGGTGGCAGCACCTCCTCAGAGCCCGCCGGAGATGGTTGTTCCGGCGCCATGTGGCGGACGTGCACGCAGCAAACGCCCTCGTCCCGCCACCTTCAAGCCTCGCCCAGCAATGCACCTCATTTCCCCTGCATCATCCGTGGGGGAGAACACTATACAAAGGAATTCGGATTGTGAGAATTTCGTGGAGTCACATCCGGTGGTGATCAAGATACCGAAGCAATCTTCCGGGGAGAATAATATTAAGAAGAAGAAGAAGATCAAATTCACTGGTCCATTAGGTCCTACTGATATGAATCAGCAGAATGGTTCCTCACAACAAGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGTCCAATGGGGCCTAAAACACTATGCAATGCTTGTGGGGTGAGGTATAAGTCCGGGAGGCTATTCCCTGAGTACAGACCGGCGGCTAGTCCGACCTTTTGCCCGTCATTGCACTCGAATTCCCATAAGAAGGTGCTTGAAATGAGAGGCAAAACCCCACTTAGTGATGATTCTTCACCAGAGCTCATTCCAAACACTAACTGCAGCCTTACCCTGGAATACATGTGA 1026 0.5185 MGPNFMDEIDCGSFFDHIDDLLDFPSEDVDAAALPSSTAAVNCDSSSFPSVWPADSDSLPCSDLSAHLPVPYEDFVQLEWLSNFVEDSFTAGGSLTMKKMEQSQSQSQSCVTKSNDSAHTQFQTSSPVSVLESSSSCSGEKPVAAPPQSPPEMVVPAPCGGRARSKRPRPATFKPRPAMHLISPASSVGENTIQRNSDCENFVESHPVVIKIPKQSSGENNIKKKKKIKFTGPLGPTDMNQQNGSSQQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRGKTPLSDDSSPELIPNTNCSLTLEYM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3218 341 PANTHER GATA TRANSCRIPTION FACTOR 14 318 - -
Mibi02g3218 341 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Mibi02g3218 341 ProSiteProfiles Ig-like domain profile. 35 129 IPR007110 -
Mibi02g3218 341 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Mibi02g3218 341 CDD ZnF_GATA 252 299 IPR000679 GO:0006355|GO:0043565
Mibi02g3218 341 MobiDBLite consensus disorder prediction 106 154 - -
Mibi02g3218 341 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Mibi02g3218 341 Gene3D - 247 297 IPR013088 GO:0006355|GO:0008270
Mibi02g3218 341 PIRSF Txn_fac_GATA_plant 4 339 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi02g3218 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 310 - -
Mibi02g3218 341 MobiDBLite consensus disorder prediction 106 142 - -
Mibi02g3218 341 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Mibi02g3218 341 FunFam GATA transcription factor 242 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3218 Mibi-ChrMibi02 57200437 57201898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3218 18 323 C2C2-Gata Transcription Factor Family AT4G32890 37.025 1.40e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi02g3218 GATA 5.8e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g3218 02 57200437 57201898 Mibi02g3218 02 57200437 57201898 ECH