Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3158 ATGGGTACTATGAATCTTCTTGTATTTTTATTCTTCTCTTTGATGGCTTCTTGCTATATGGCGGTGGCCAAAGTGGTGCTGATTGGGAACAACGTCACTCTATCCTTCGATGACATTGAAGCTAATTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGCGGGGTCTTGTATATAGCAGAGCCGGTTGATGCATGTACAGAGCTGACAAATAAAGTTAAACCGCATTCAAATACAAGTTCACCTTTCGTTTTGATCATTAGAGGGGGCTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAGAGGGCTGGCTTTAAAGCTGCAATTGTCTATGACAATGAAGACGATGGTGTCTTAGTTTCAATGGCAGGTAATTCCGGTGGTGTAAAAATACATGCTGTATTTGTGACTAAGGCCTCGGGTGAAACACTGAAAAAATATGCTGGACTGACTAACGTTGAAGTGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTATTAGCAATGTCAGCAGTTTTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATCCGGAGAGAAAGGCCGCAATCTTCTCGTGTTCGTGAGTTTCATGGGATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGACATTTACTGCTGTTTTAGAGGATAATTGCACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTTCCCTGTTGTCACAAGTTTCATGCTGCTTGCGTGGATGCTTGGCTCACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGGACTGGTTTACCTGACCCTCCACCTTCAGAATGCACACCTTTGCTTTCATCTGCCGCAGCATCTGCAGCATCCTCTGTGGCGTCATCTCTGAGATCGTCATTAGCATCATCTTCTGCAATACAAATTGACAGGGCATTATCACGATCCCCATCTGTTTCTCGGGACCATTCTTTGGCTAGTACTCCCTACATTCAGCCATCATTTAGGTCCCATCGCCAATCTCCCTTCATGACTGTCAGTCGAAGCTCTTTAGATCTTAGGAATGCATCCCAAAGATCTCAGGCTTCTCATTTGAATTCTCCACATTCTATGGGTTACCCATCGATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTAGAAGCCCGAGCAATGTTTCTGCAAGTTATCTTGGTTCTTCTAGTCATCATCAGCACCCGCTTCGTTATAGTGAGTCGGCTGCGAGTTTTTCTCCATTTGCTTCTGCCCAGTCCCTTCCAGAATGCTGA 1335 0.4419 MGTMNLLVFLFFSLMASCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNKVKPHSNTSSPFVLIIRGGCSFEEKVRRAQRAGFKAAIVYDNEDDGVLVSMAGNSGGVKIHAVFVTKASGETLKKYAGLTNVEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQSSRVREFHGMSSRLVKAMPSLTFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDAWLTSWRTFCPVCKRDARTGLPDPPPSECTPLLSSAAASAASSVASSLRSSLASSSAIQIDRALSRSPSVSRDHSLASTPYIQPSFRSHRQSPFMTVSRSSLDLRNASQRSQASHLNSPHSMGYPSMSSMNSRYLSPHIRSPSNVSASYLGSSSHHQHPLRYSESAASFSPFASAQSLPEC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3158 444 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Mibi02g3158 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Mibi02g3158 444 Pfam PA domain 77 143 IPR003137 -
Mibi02g3158 444 CDD PA_C_RZF_like 21 164 IPR044744 -
Mibi02g3158 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Mibi02g3158 444 Gene3D - 17 156 - -
Mibi02g3158 444 SUPERFAMILY RING/U-box 228 289 - -
Mibi02g3158 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Mibi02g3158 444 Pfam Ring finger domain 234 277 IPR001841 -
Mibi02g3158 444 SMART ring_2 235 276 IPR001841 -
Mibi02g3158 444 SUPERFAMILY PA domain 80 159 IPR046450 -
Mibi02g3158 444 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 288 - -
Mibi02g3158 444 MobiDBLite consensus disorder prediction 352 400 - -
Mibi02g3158 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3158 Mibi-ChrMibi02 56327202 56332377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3158 23 443 C3H Transcription Factor Family AT1G22670 49.192 7.04e-119 352