Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3120 ATGCAGGCGAAAGTTTCCCCTAACCCACCCTCTTTTCCAGACTTCAGTTTGCAGCATAATAGTCAACAGAGGTGGGAAGATCCCTGGATGTTGGATTATGGTAACCGGATGGAAACCCTGTTTAAAGAATTCAACCAAGCTTGTGGAACCCAGTCCTTGCTTCCATGTGGCTCCAACAACGAGATCAAGATCCCGAATCAGATGGGCGACACATCATCACGAACCTGTAAACTCCAAGATTGGGATCCCTCCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAAATTCATCAGCTCCAGGGTCTATTGCATTTGATTGTTGATCAGAAAGGTCAACAATCTGGACACCCCGATGAACTTATAGTTCAAGAAAAGCAGCTTGTCACAGCCAATCTGACATCGATCATCGTTCAGTTGATCTCTACAGCGGGAAGTCTTCTTCCATCTGTCAGGCTTGCTACTTCAAACACCAGTCCATCTGTCGGACAGCATGGCCAGATTCCCAGGAATTCTTTTCCGTCTGGATTAGATCCAAGTAGTAGCAGTATCCAACCACAACATGATATCAGAGATAAAATATCTGATCAATCCAACCAGATTGATCTTACTAATATGTGTGAAATGGAGCAAAACCACGTGGAAGAACACGAATTGAAAGATGAAGAGGATATGGATGAGGGTGAGAACCTTCCACCAGGTTCTTTTGAGATCTTGCAGCTAGAAAAAGAAGAAATCCTTGCTCCTCACACTCATTTCTGTACAATATGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACACCAGAAGCACTTGCAAAACCCAACAAAGAATCCGTGTCTGAACCAAAGCTTATCAAGAGATACTCCTGTCCCTACCCCGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAGCCTCTGAAGACTATTCTGTGTGTGAAAAACCATTACAAAAGAAGTCATTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACGAAGAAATTCTCAGTCATGGCGGACCTTAAAACTCATGAAAAGCACTGTGGTAGGGATAAATGGCTTTGCTCATGTGGCACGACATTTTCAAGGAAAGATAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCGATACCCTTGGATGAATCAAAAGCACCAGCTGGGCAAGTTGATATGGAAATCAATGAGAACAACAACAATAATAATATCAATAATAATGAGGGAGGAAGCATTAACTTGAACTTTGGCGGATCAAATGCTTGTTGTGATAATGGGATTCAAAACATTATGGATGTGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACTTGTAACTTTGGTGAGTTCAATGATTTTCCTCGACCCCCATTTGAAGATGACACTGAAGGTTCGTTCCCTTTTCTCATGCCTGAATCCTTCAACTATTCTTCAAAATCTGGGGGAGAAACGAGTTCTGACAATCTGTTGTAA 1542 0.4215 MQAKVSPNPPSFPDFSLQHNSQQRWEDPWMLDYGNRMETLFKEFNQACGTQSLLPCGSNNEIKIPNQMGDTSSRTCKLQDWDPSIMLENLSFLEDKIHQLQGLLHLIVDQKGQQSGHPDELIVQEKQLVTANLTSIIVQLISTAGSLLPSVRLATSNTSPSVGQHGQIPRNSFPSGLDPSSSSIQPQHDIRDKISDQSNQIDLTNMCEMEQNHVEEHELKDEEDMDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAGQVDMEINENNNNNNINNNEGGSINLNFGGSNACCDNGIQNIMDVKGITDDPISYLSSLNFETCNFGEFNDFPRPPFEDDTEGSFPFLMPESFNYSSKSGGETSSDNLL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3120 513 MobiDBLite consensus disorder prediction 157 188 - -
Mibi02g3120 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 73 424 IPR044300 GO:0010044|GO:0010447
Mibi02g3120 513 SMART c2h2final6 301 334 IPR013087 -
Mibi02g3120 513 SMART c2h2final6 252 274 IPR013087 -
Mibi02g3120 513 SMART c2h2final6 339 361 IPR013087 -
Mibi02g3120 513 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Mibi02g3120 513 MobiDBLite consensus disorder prediction 1 20 - -
Mibi02g3120 513 Gene3D Classic Zinc Finger 235 305 - -
Mibi02g3120 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Mibi02g3120 513 SUPERFAMILY beta-beta-alpha zinc fingers 251 276 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3120 Mibi-ChrMibi02 55750166 55751707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3120 219 513 C2H2 Transcription Factor Family AT1G34370 67.000 1.95e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g3120 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g3120 02 55750166 55751707 Mibi02g3120 02 55750166 55751707 ECH