LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g3102	ATGGCAGCAACCTCAGATGAAATGTCAGATTTGGAGTGGATACGCCATCATCTTCTCGGTTCTGATTTTTCCTCCTCCTCCTCATCAGAATCCTTCTTACTATCCAATCTCTTCCCTGTAAAACTCGAACATTCTTCGCCGGAGCTTGATCTGAAACCTAGTACTCCGCCGCGAAGTCTCCATTCATTTGTTGAAACTTTCAATTTTGAGGATCTTGAGGCTTTGAATTCAGCGTCGGAGGTCGAAATCGAGGAGAAGACGGTGGTGGCGGCGCCGGCTCCGGCGGAGAGGAGGTACAGGGGAGTACGGAGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGACCCGGAAAGGGAGTCGGGTTTGGTTGGGGACGTTTGATAGTGAGATTGATGCAGCCAAGGCTTATGATTCTGCTGCTTTTAGAATGAGGGGTCGGAGGGCAATTTTGAACTTTCCTCTCGAGGCCGGTGTGTCCGACCCGGCTCCGAATCGGTGTGGCCGGAAACGGAGAAGAGAGAGTTCCCCAGAGGATTTGTCCCAAATTTCTACTCCCATTTTCAATTAG	576	0.5208	MAATSDEMSDLEWIRHHLLGSDFSSSSSSESFLLSNLFPVKLEHSSPELDLKPSTPPRSLHSFVETFNFEDLEALNSASEVEIEEKTVVAAPAPAERRYRGVRRRPWGKFAAEIRDPTRKGSRVWLGTFDSEIDAAKAYDSAAFRMRGRRAILNFPLEAGVSDPAPNRCGRKRRRESSPEDLSQISTPIFN	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g3102	191	SUPERFAMILY	DNA-binding domain	98	158	IPR016177	GO:0003677
	Mibi02g3102	191	PRINTS	Ethylene responsive element binding protein signature	99	110	IPR001471	GO:0003700\|GO:0006355
	Mibi02g3102	191	PRINTS	Ethylene responsive element binding protein signature	138	158	IPR001471	GO:0003700\|GO:0006355
	Mibi02g3102	191	PANTHER	DNA-BINDING DOMAIN	73	171	IPR044808	GO:0003700\|GO:0009873
	Mibi02g3102	191	Pfam	AP2 domain	98	148	IPR001471	GO:0003700\|GO:0006355
	Mibi02g3102	191	Gene3D	AP2/ERF domain	97	158	IPR036955	GO:0003700\|GO:0006355
	Mibi02g3102	191	FunFam	Ethylene-responsive transcription factor 2	97	158	-	-
	Mibi02g3102	191	CDD	AP2	106	156	IPR001471	GO:0003700\|GO:0006355
	Mibi02g3102	191	MobiDBLite	consensus disorder prediction	160	191	-	-
	Mibi02g3102	191	ProSiteProfiles	AP2/ERF domain profile.	98	156	IPR001471	GO:0003700\|GO:0006355
	Mibi02g3102	191	SMART	rav1_2	98	162	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g3102	Mibi-ChrMibi02	55436568	55437143	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g3102	3	184	AP2-EREBP Transcription Factor Family	AT5G07580	42.500	8.81e-40	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi02g3102		AP2	3.7e-14	CL0081