Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3073 ATGTATATATATAAAAAGAAAAGCTACGTCGATATCCCATTCATATACTCTCATTCGAAAGAATTCCTATCATCATCTCTCAAAAGGCCTCTTAGATTTCTCTGCAAGATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCTGATACAATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAAGGGATTCCTCCTGACCAGCAGAGACTGATCTTCGCTGGTAAACAGCTCGAAGATGGACGAACCCTGGCTGACTATAATATTCAGAAGGAGTCAACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGGATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCCGATACTATCGATAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCTCCTGACCAGCAGAGACTCATCTTCGCCGGCAAACAACTAGAGGATGGATGGACTCTTGCTGATTACAACATTCAAAAGGAATCCACACTGCACTTGGTTCTGCGACTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTGACAGGAAAGACCATAACTTTGGAAGTTGAAAGCTCTGATACAATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGTCGGACTCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTGCACTTGGTTCTGCGACTCCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCACAGGGAAGACGATTACACTGGAGGTTGAAAGTTCGGACACAATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGGCTTATCTTCGCTGGCAAACAACTTGAGGATGGACGGACCCTTGCTGATTACAACATTCAGAAGGAATCCACACTGCACTTGGTTCTGCGTCTCCGTGGTGGGATGCAAATTTTTGTGAAGACTCTGACTGGGAAGACTATTACCTTGGAAGTTGAAAGCTCGGATACAATAGATAATGTGAAGGCCAAGATACAGGACAAGGAGGGTATCCCTCCTGATCAGCAGAGGCTTATATTTGCTGGGAAGCAGCTAGAAGATGGTCGCACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTGCATTTGGTCCTGCGTCTCCGTGGTGGGATGCAAATTTTTGTGAAGACTCTGACAGGGAAGACCATAACTTTGGAAGTTGAAAGCTCGGATACTATTGATAATGTAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGCAAACAACTCGAGGACGGCCGCACCCTTGCTGATTACAACATTCAGAAGGAATCCACCCTGCACTTGGTTCTGCGTCTCCGTGGTGGGATGCAAATTTTTGTGAAGACTCTGACCGGGAAGACTATTACTCTGGAGGTCGAAAGTTCGGACACAATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAAGGGATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACATTGGCTGACTACAACATTCAGAAGGAATCTACTCTCCATCTTGTCCTTCGTCTTCGCGGTGGCTTCTAA 1710 0.462 MYIYKKKSYVDIPFIYSHSKEFLSSSLKRPLRFLCKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGWTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 189 264 IPR000626 GO:0005515
Mibi02g3073 569 CDD Ubl_ubiquitin 417 492 - -
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Mibi02g3073 569 FunFam Polyubiquitin 3 341 416 - -
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 341 416 IPR000626 GO:0005515
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 187 264 IPR029071 -
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 417 492 IPR000626 GO:0005515
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 493 568 IPR000626 GO:0005515
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 215 240 IPR019954 -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 111 188 IPR029071 -
Mibi02g3073 569 Pfam Ubiquitin family 191 262 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 495 566 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 115 186 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 343 414 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 419 490 IPR000626 GO:0005515
Mibi02g3073 569 Pfam Ubiquitin family 267 338 IPR000626 GO:0005515
Mibi02g3073 569 CDD Ubl_ubiquitin 37 112 - -
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 367 392 IPR019954 -
Mibi02g3073 569 CDD Ubl_ubiquitin 341 416 - -
Mibi02g3073 569 FunFam Polyubiquitin 3 417 492 - -
Mibi02g3073 569 FunFam Polyubiquitin Ubiquitin 113 188 - -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 36 112 IPR029071 -
Mibi02g3073 569 Gene3D - 417 492 - -
Mibi02g3073 569 Gene3D - 190 264 - -
Mibi02g3073 569 Gene3D - 34 112 - -
Mibi02g3073 569 Gene3D - 265 340 - -
Mibi02g3073 569 Gene3D - 113 189 - -
Mibi02g3073 569 Gene3D - 341 416 - -
Mibi02g3073 569 Gene3D - 493 569 - -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 340 416 IPR029071 -
Mibi02g3073 569 CDD Ubl_ubiquitin 189 264 - -
Mibi02g3073 569 FunFam Polyubiquitin 3 189 264 - -
Mibi02g3073 569 PANTHER UBIQUITIN 341 420 - -
Mibi02g3073 569 CDD Ubl_ubiquitin 493 568 - -
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 519 544 IPR019954 -
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 139 164 IPR019954 -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 491 568 IPR029071 -
Mibi02g3073 569 FunFam Polyubiquitin 3 493 568 - -
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 291 316 IPR019954 -
Mibi02g3073 569 FunFam Polyubiquitin 3 265 340 - -
Mibi02g3073 569 CDD Ubl_ubiquitin 113 188 - -
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 113 188 IPR000626 GO:0005515
Mibi02g3073 569 FunFam Polyubiquitin 3 37 112 - -
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 63 88 IPR019954 -
Mibi02g3073 569 CDD Ubl_ubiquitin 265 340 - -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 264 340 IPR029071 -
Mibi02g3073 569 SMART ubq_7 265 336 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 341 412 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 37 108 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 417 488 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 113 184 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 493 564 IPR000626 GO:0005515
Mibi02g3073 569 SMART ubq_7 189 260 IPR000626 GO:0005515
Mibi02g3073 569 PRINTS Ubiquitin signature 47 67 IPR019956 -
Mibi02g3073 569 PRINTS Ubiquitin signature 89 110 IPR019956 -
Mibi02g3073 569 PRINTS Ubiquitin signature 68 88 IPR019956 -
Mibi02g3073 569 ProSiteProfiles Ubiquitin domain profile. 37 112 IPR000626 GO:0005515
Mibi02g3073 569 ProSitePatterns Ubiquitin domain signature. 443 468 IPR019954 -
Mibi02g3073 569 SUPERFAMILY Ubiquitin-like 416 492 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3073 Mibi-ChrMibi02 54627481 54630002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3073 493 569 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.18e-46 156