Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3032 ATGCCCAAATCCCAAACCCTAAATTCGCTCGACCTCTTCCACAGTGCTCTCCAACCCCTAAATCCCTCGCCACCTTCTCCGTCATTCTCTCTCCAACCACCACCACACCATTCCCCTCTTCCGCCATCTTTCCCCCAATCCAAACTCATCCCCAAAACCCGATTCCTCGTCGACGCGTTTCGCCATGCCGGCGATTACTCCGTTTCCTACTTCCTCTCCCATTTCCATTCTGATCATTACACTGGTCTTGCCTCTAATTGGTCTAAAGGCATTGTTTATTGCTCAAATATTACGGCGAGACTTGTCATTGAAGTTCTCGGGGTTTCTTCGAAGTTTGTTGTCCCTTTAAGGCTTTGTGAGGTTGTTGAGATTGATGGCTGTGAGGTTACTCTTGTTGATGCGAATCATTGCCCTGGGGCTGTGCAATTCTTGTTTAAGATTCCTGGTGTTGATGGTAAGTGTGAGAGGTATGTTCATACTGGCGATTTTCGGTTTTCTAAGGCTATGAAGTTAGAGCCTTTACTTGCTTCATATGTTGGTGCTGATGCTGTGTTTTTGGATACAACTTACTGTCATCCGAAGTTTCTGTTTCCTGGCCAGGAAGAGTCTGTGGCTTATGTAGCTGATGTAGTAGGGAGGGTTGAGGGTGAAAATGATTGTTCTAGTAGGAATGTTTTGTTCCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTTTGCTTGAACTTGCTCGTAGGTTTAAACGTAAGGTGCATGTGGATGCTAGGAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAGGCGGGGAGTTTACGGATGATGACTCTGAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACGTGGCCGTACTTTAGGCCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAGGTTGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAATTTACTGTGAAGTCGAAGGACTCGTTTCAGATTCATCTTGTACCGTATAGTGAGCATTCTAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACAGTAGGTGTAGATGTTGACAAAACTGACAGTAAACATGTGGAGAAAATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGGAATTCCTTAAGGGATTTCATTGTGCATCTAGTGATGGGGGCTGCAAGTTTGACACGGATGATAATGATGCCATGAAGCCGGGACAGAGCATGGAGACAGAAGTGAAGTTATTTGATAAGGGAGCTGATAAGAGTATTGATCCAAATATTGGTCTAAATTTGTCTTCTACTCTTGAGAAACCTGACTTGCGGGATCCCACATCACTAAAGGATGAGGAAACGGAGAAAATCTGTCAAGAGATGTCTTGTTATTTGCCTGCATGGGTGACTCAAGGACAAGTTCTAGAGCTCATCAGCAATGCAAGGGGCAATGTTGTTGACGCTGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGATAAAGTATTTTCCTGCCGAACATCTGTTTCTGCATCCGTATGCTTATCAAGTGACAGTGATTTGCTTTCGAAACCACCCGTTGTTGGTGGTAAAACTTGCACGAGTGTTGACATTACACCAAGTCAAGGATTTAAGCTATCCACCCTGAGAAATTCAGTGGCAAGTAGCATTTCTCCGGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAAGCAAGAAAGGACAAGTCCATACAAAATCAGAATCTAGTGGGTCGAAACAGTCCACGATAACAAAGTTTTTTACTAAAGCCTTGCCTGATATCACCCAATCTGGTGGTTTTGAAGGTAGTATTGATGAAAGCCCTAAAGTTGAAGACTTGCCTCAATTGGATGTTGAAAAAGCATACAAGGATGAGATCAACCAGTTCATGCGGATAATAAATGGCAATGAATCATTAAAAAATTATGCTATCACAATAATTGAGAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATCCTGGCAATTTTGATGAGAGTGAAAAATCAGTTCAAGTTGAGTGCGAAGTGGACAACTCTTCAGAAAAGAAATGTGTGTCACGGGAATTGAGATCCACACCTGATATTTCTGTGCAAAGCATATCAAGAGAGAAAGCAGATGCAACTCTTGTATCTCTACCACCTAAAGAATACAACCCTAAAGAACATGCATGTTGGAGAGATGGAGAGTCTGCTCCATATTTACATCTTGCAAGAACCTTTAGCCTTCTTGAGGATGAGAAAGGGAAAATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAATTAAATATTGGTGGAAGTGTGATTGCTGCAGCACTGGAAGAGGCATGTGGAACTACTCGATTAAAAATAAAGGAGATGTATAACAAATTGGGAGACCTTGGTGATGTTGCTCAAGAGTGTCGACAAACACAGAGATTACTTGCTCCTCCAACCCCACTTCTGATAAAAGATGTTTTCTCTTCACTCCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAACTGTAAATCTCATGTGCTCATGTCGGGAGAAAGAGATAAAGTTTCTTGTTCGTACTTTGGCCAGGAATTTACGGACTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCATGCTGTCGTAATGAATTCATGTCCTGCTTTACACCAAGTTGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCATTTCGGCAGAAATCATTGAAGCATATAACATACTTCCAAATTTGGATCTTGTAATACCATCTCTAATGAACAAAGGCTCTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGTGCTGAAGTTATTTCAAAATAAAGCTTTTACTTGTGAATATAAATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGCGATGGGTCGGTTCGCGTTTTCTCAAGAAATGGAGATGAAACAACATTAAGATTTCCAGATTTGGCTGACATAATCAAGGAATTCTGCAAGCCTACTTCAGTGACTTTTATTCTGGATGCAGAAATTGTGGGTATTGATAGGAAGAATGGATATAGATATATGGCTTTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGAGGCCTCAGTTGCTACAGACAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTGCGTGAAAGGCGAAAATATCTGAAGGATTTGTTTTATGACGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTCATTAACCTGTGAAGCCACTGTAAGTAAGATAAACTCTTTCTTAGAAGCCGCAATCAATTCATCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCCGGATATTCCCCATCAAAGCGTACAGACACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGCTACAATCCTGAAACGGAGGAGTACCAAAGCGTATGCCGTGTGATGTCCGGGTTCTCAGATGCCTTCTATATAGAGATGAAAGAATTTTTTTCTGAGGACAAGATACTGTCAAAAAAGCCACCTTATTACCGAACAGACGAGGTACCGGACAAGTGGTTCTGTCCACTACTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCCCCAGTTCACCAAGCTGCCATTGGTCTCGTTCATCCGTCTCGTGGCATCTCAATCAGATTCCCCAGATTTGTTCGCAATGTGTTGGACAGGAACCCTGAAGAATGCAGCACAGCTGCTGATATAGCTGAAATGTTCAATTCTCAGACTCGCAAGATGGATGTTGCAGCTGAAGATTAG 4191 0.4152 MPKSQTLNSLDLFHSALQPLNPSPPSPSFSLQPPPHHSPLPPSFPQSKLIPKTRFLVDAFRHAGDYSVSYFLSHFHSDHYTGLASNWSKGIVYCSNITARLVIEVLGVSSKFVVPLRLCEVVEIDGCEVTLVDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKLEPLLASYVGADAVFLDTTYCHPKFLFPGQEESVAYVADVVGRVEGENDCSSRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDDSETNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVEKMMKHFAGLVDETANKQEFLKGFHCASSDGGCKFDTDDNDAMKPGQSMETEVKLFDKGADKSIDPNIGLNLSSTLEKPDLRDPTSLKDEETEKICQEMSCYLPAWVTQGQVLELISNARGNVVDAVSNFFERETEFHDKVFSCRTSVSASVCLSSDSDLLSKPPVVGGKTCTSVDITPSQGFKLSTLRNSVASSISPAKRKRNSERKLSKKGQVHTKSESSGSKQSTITKFFTKALPDITQSGGFEGSIDESPKVEDLPQLDVEKAYKDEINQFMRIINGNESLKNYAITIIEKTKGDVNKALDIYYCNPGNFDESEKSVQVECEVDNSSEKKCVSRELRSTPDISVQSISREKADATLVSLPPKEYNPKEHACWRDGESAPYLHLARTFSLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSVIAAALEEACGTTRLKIKEMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDVFSSLHKISLQTGNGSTLRKKSITVNLMCSCREKEIKFLVRTLARNLRTGAMIRTVLPALAHAVVMNSCPALHQVGTAENLKEKLQGISAEIIEAYNILPNLDLVIPSLMNKGSNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSVRVFSRNGDETTLRFPDLADIIKEFCKPTSVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKEASVATDSIKVDICLFVFDIMFANGQQLLGFPLRERRKYLKDLFYDEKLGYFEYAKETTIEADDASLTCEATVSKINSFLEAAINSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDAFYIEMKEFFSEDKILSKKPPYYRTDEVPDKWFCPLLVWEIRGAEFTVSPVHQAAIGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFNSQTRKMDVAAED 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3032 1396 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 283 1388 - -
Mibi02g3032 1396 CDD OBF_DNA_ligase_I 1242 1385 - -
Mibi02g3032 1396 Pfam ATP dependent DNA ligase C terminal region 1259 1363 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mibi02g3032 1396 CDD SNM1A-1C-like_MBL-fold 45 193 - -
Mibi02g3032 1396 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1037 1045 IPR016059 GO:0003909
Mibi02g3032 1396 Gene3D - 746 1015 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi02g3032 1396 Pfam DNA ligase N terminus 767 943 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi02g3032 1396 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 825 1383 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mibi02g3032 1396 MobiDBLite consensus disorder prediction 578 610 - -
Mibi02g3032 1396 MobiDBLite consensus disorder prediction 22 45 - -
Mibi02g3032 1396 FunFam DNA ligase 1238 1395 - -
Mibi02g3032 1396 Gene3D - 1023 1237 - -
Mibi02g3032 1396 Pfam DNA repair metallo-beta-lactamase 271 375 IPR011084 -
Mibi02g3032 1396 SUPERFAMILY Nucleic acid-binding proteins 1242 1386 IPR012340 -
Mibi02g3032 1396 Gene3D - 50 372 IPR036866 -
Mibi02g3032 1396 Gene3D DNA ligase/mRNA capping enzyme 1042 1173 - -
Mibi02g3032 1396 CDD Adenylation_DNA_ligase_I_Euk 1004 1236 - -
Mibi02g3032 1396 Gene3D - 1238 1395 IPR012340 -
Mibi02g3032 1396 Pfam ATP dependent DNA ligase domain 1013 1233 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi02g3032 1396 SUPERFAMILY Metallo-hydrolase/oxidoreductase 53 373 IPR036866 -
Mibi02g3032 1396 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 972 1235 - -
Mibi02g3032 1396 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 995 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi02g3032 1396 Gene3D - 196 350 - -
Mibi02g3032 1396 ProSiteProfiles ATP-dependent DNA ligase family profile. 1124 1271 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi02g3032 1396 FunFam DNA ligase 1042 1173 - -
Mibi02g3032 1396 FunFam DNA ligase 196 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3032 Mibi-ChrMibi02 53237113 53251179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3032 739 1386 Core DNA Replication Machinery Family AT1G08130 39.385 5.95e-165 513