Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3023 ATGGATGGGATAAATAGATTATCTCCCAACAAATTGGTACAGTGTCGGATATGTCATGATGAAGATGAAGACTCAAACATGGAGACTCCATGTTCTTGTAGTGGCAGTTTGAAGTATGCACATCGAAAATGTGTTCAAAGATGGTGTAATGAGAAGGGTGATACTGTCTGTGAGATTTGCCGACAGCCTGGTTATACAGCGCCGCCTCCACTATTCCATTATGGCAGTTCCCCATTGAATTTTAGAGGTAACTGGGAGATATCCAGAAGGGATCTGCAAAATCATCAGTTCATTGAAATGTTTGCTGCTAATCGTGAATTCTCAGACAGTGATGTGGAATACTCAATCCCCTCGACAGCGAGTCTGGTCTGCTTTCGCATTGTTGCAATTATTTTTATTGCTCTTCTTGTTTTACGCCATACCCTCCCAATTATACTCAGCAGAGGAGGGGAATACACATTGACTCTTTACATGTTACTGGCTATGAGAACGGTTGCAATACTTTTACCTGTGTGTATAATGGTTAAGGCATTTACCATTATCCAAAGGCGACGATACCAGGATTATTACTCCTCCATTCTGCAACATGAGGAGAGTGAGTTGGAACAGCCTCAGTCTCGTGTAATTCATATCTTGTAA 639 0.4163 MDGINRLSPNKLVQCRICHDEDEDSNMETPCSCSGSLKYAHRKCVQRWCNEKGDTVCEICRQPGYTAPPPLFHYGSSPLNFRGNWEISRRDLQNHQFIEMFAANREFSDSDVEYSIPSTASLVCFRIVAIIFIALLVLRHTLPIILSRGGEYTLTLYMLLAMRTVAILLPVCIMVKAFTIIQRRRYQDYYSSILQHEESELEQPQSRVIHIL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3023 212 ProSiteProfiles Zinc finger RING-type profile. 15 61 IPR001841 -
Mibi02g3023 212 FunFam Zinc finger family protein 4 67 - -
Mibi02g3023 212 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Mibi02g3023 212 SMART ringv_2 14 61 IPR011016 GO:0008270
Mibi02g3023 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 67 IPR013083 -
Mibi02g3023 212 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Mibi02g3023 212 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 187 IPR033275 -
Mibi02g3023 212 Pfam Protein of unknown function (DUF3675) 63 177 IPR022143 -
Mibi02g3023 212 CDD RING_CH-C4HC3_MARCH 15 61 - -
Mibi02g3023 212 SUPERFAMILY RING/U-box 12 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3023 Mibi-ChrMibi02 53145382 53147924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3023 14 61 C3H Transcription Factor Family AT2G37950 47.059 1.08e-07 48.9