Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3010 ATGCTGAGGATATTCAACCCCTTGTCTGTGATAATGGGACAGGAATGGTCAAGTAAGTATAGAATAACCCATTGCAATGTTCAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTTGGTGATGAGGCACAATCTAAGAGGGGTATTCTGACTCTCAAGTATCCAATTGAGCATGGAATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTTTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTTTTAACTGAGGCTCCACTTAATCCCAAGGCTAATCGTGAGAAGATGACTCAAATTATGTTTGAGACTTTCAACACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAGGGTTATGCTCTCCCTCATGCCATCCTTCGTCTTGACCTGGCTGGTCGTGACCTCACTGAATACATGATGAAAATTTTGACTGAACGTGGGTACTCTTTTACCACTTCAGCAGAGCGGGAAATTGTTAGAGATGTGAAGGAAAAGCTAGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACGTCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGTCAGGTCATCACTATTGGTGCTGAACGTTTCAGATGTCCAGAGGTTTTGTACCAACCATCTTTGATTGGAATGGAAGCAGCAGGAATTCATGAGACAACATACAACTCCATCATGAAGTGTGATGTCGATATTAGGAAAGACCTGTATGGTAACATTGTCCTCTCAGGAGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCATTAGCTCCAAGTAGTATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATCGGTGGTTCAATTTTGGCATCCCTGAGCACCTTTCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGACCATCCATTGTGCATAGGAAATGCTTCTAA 1158 0.4516 MLRIFNPLSVIMGQEWSSKYRITHCNVQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3010 385 Gene3D - 25 379 - -
Mibi02g3010 385 CDD NBD_sugar-kinase_HSP70_actin 84 191 - -
Mibi02g3010 385 FunFam Actin, muscle 190 281 - -
Mibi02g3010 385 Pfam Actin 25 385 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 71 93 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 59 70 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 36 45 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 150 169 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 125 138 IPR004000 -
Mibi02g3010 385 PRINTS Actin signature 246 262 IPR004000 -
Mibi02g3010 385 FunFam Actin, alpha skeletal muscle 339 385 - -
Mibi02g3010 385 Gene3D Actin; Chain A, domain 4 190 281 - -
Mibi02g3010 385 ProSitePatterns Actins signature 1. 63 73 IPR004001 -
Mibi02g3010 385 FunFam Actin, alpha skeletal muscle 264 338 - -
Mibi02g3010 385 SUPERFAMILY Actin-like ATPase domain 25 163 IPR043129 -
Mibi02g3010 385 ProSitePatterns Actins and actin-related proteins signature. 114 126 IPR020902 -
Mibi02g3010 385 FunFam Actin, alpha skeletal muscle 21 174 - -
Mibi02g3010 385 Gene3D - 148 348 - -
Mibi02g3010 385 SMART actin_3 25 385 IPR004000 -
Mibi02g3010 385 PANTHER ACTIN 29 378 IPR004000 -
Mibi02g3010 385 SUPERFAMILY Actin-like ATPase domain 157 385 IPR043129 -
Mibi02g3010 385 ProSitePatterns Actins signature 2. 366 374 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3010 Mibi-ChrMibi02 52905593 52907256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3010 27 385 Cytoskeleton Gene Families AT3G12110 96.657 0.0 729