Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g3007 ATGAAGTTAAGCACGACCAGACCAGTTGTCCAAGTTCTCGACGTGCTCCTCCGGCCAAAAGCTAGGGTTTTAGGCAGTATTCCTCTAACCTCACACCCTCGACAGCCGCTCATCTTCACTCTTCTTCAGAGCTTTGCCGCCGCCGCCGCCACTGCTCTCCATAAATCTGTGTTAGCCAGTAGGACCAGAAGAAGCAGAGTTATGGCTGAAGCAGAAGAAGGAAAACGTAATGGCTCCCTTGAGGAAGGAAAGAAGAGGAAGAGGAAGAGGAACAGGCCACAGAAATCCACGGAGGAGCAATCGGAACCCCAAAACTCAGACCACCATGATGGGCATCAGGAGGATGAGGAGGATGGCGAACAAAGGAAGTTAAAGAATGTTGGGTCTGGTGGAATTATGAGCACTCTGTCCTTTGATTCTCTGGGATTGTCGGAACCCACCTTTAAGGCCATTAACGATATGGGATTTGAGCATACCACACAGATTCAAGCCAGAGCAATCCCTCCACTATTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCTTTTCTTATACCAGCCGTGGAGCTGTTGTACCATGCTCAATTCACTCCCCGTAATGGAACTGGTGTTGTTGTCATTTGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCGAAAGAACTCCTCAGGTATCACTCTCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCCAACTTTGAGGAGGAAATGAAGCAGATCATTAAAATCTTACCAAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACTAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATATATGTTGATGTAGATGATGGGAGAACCAAGGTCACTAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAACGTTTTGTTGTTCTTTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAGTTTCATGCAGACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAACAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGCGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGGACAGCTCGGGGGGAAGGTGGCAAAGGAAATGCCTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTGAAGGCGGCAAAGGTTCCTGTGAAAGAATATTTATTCGATGAAAAGAAGCTGTCAAATGTTCAGTCTCACCTGGAAAAGCTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCGGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCTTGGACAGTGGCGCTTCAAAGCATAGGAAGAAAATGCGTAAGATTGAAGGAGGCAAACATGGATTCAGTGAAAGCAATCCTTATGGTAACAAAATTGCTGCAGATGATAACCGCCAATTTGTGAGGCATTAG 1878 0.4388 MKLSTTRPVVQVLDVLLRPKARVLGSIPLTSHPRQPLIFTLLQSFAAAAATALHKSVLASRTRRSRVMAEAEEGKRNGSLEEGKKRKRKRNRPQKSTEEQSEPQNSDHHDGHQEDEEDGEQRKLKNVGSGGIMSTLSFDSLGLSEPTFKAINDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVVVICPTRELAIQTHAVAKELLRYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLSNVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGLDSGASKHRKKMRKIEGGKHGFSESNPYGNKIAADDNRQFVRH 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g3007 625 CDD SF2_C_DEAD 357 488 - -
Mibi02g3007 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 342 IPR014001 -
Mibi02g3007 625 MobiDBLite consensus disorder prediction 60 128 - -
Mibi02g3007 625 MobiDBLite consensus disorder prediction 93 124 - -
Mibi02g3007 625 FunFam RNA helicase 353 584 - -
Mibi02g3007 625 SMART helicmild6 397 478 IPR001650 -
Mibi02g3007 625 Pfam Helicase conserved C-terminal domain 372 477 IPR001650 -
Mibi02g3007 625 Gene3D - 353 580 IPR027417 -
Mibi02g3007 625 CDD DEADc_DDX18 147 344 IPR044773 GO:0003724|GO:0005524
Mibi02g3007 625 SMART DUF4217_3 518 581 IPR025313 -
Mibi02g3007 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 527 IPR001650 -
Mibi02g3007 625 Pfam Domain of unknown function (DUF4217) 519 579 IPR025313 -
Mibi02g3007 625 PANTHER RNA HELICASE 92 522 - -
Mibi02g3007 625 MobiDBLite consensus disorder prediction 65 81 - -
Mibi02g3007 625 Gene3D - 79 346 IPR027417 -
Mibi02g3007 625 SMART ultradead3 155 360 IPR014001 -
Mibi02g3007 625 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Mibi02g3007 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 492 IPR027417 -
Mibi02g3007 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Mibi02g3007 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 343 IPR027417 -
Mibi02g3007 625 Pfam DEAD/DEAH box helicase 160 331 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g3007 Mibi-ChrMibi02 52849525 52855296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g3007 137 496 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 1.51e-46 168