Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2922 ATGTTTAATATCAGTATCGGAGGCTCCAGAAAATCTTATTCTTACGAAGATTTTCTTGCATCTGATAAGGTATGGTGTTTTTATTATTCAAGTACTAGCTGGTTGAAGCACTGCAAACCGCTCTGGCATGAGTTTCTTGCAATATTATTTCGTTGGTTGAATGTCAAGAGAGATCAAATAATGGTTCATGGAACTAATTTAGTTGTCCTTGGGGTCTCTGCTGGTTTGGCCTTTGGAATTTTGATAGCCTATCTCATATGTTTAGCCGTAAAGTGGCGTAAGAACCGTGCTCATCTTAGGCGTTGTGCAAATGAACATAGTGCAACAACACTTCCAATACGCACAAATGAAGTAGAAACGAGCACTGACTTTAGTGCTTCTCTTACAAGCACCATAGCTGCTTCAATGTCAGAAAATCCACAGAAAGGTTCGCGTTTATCTTGGTGGAAACGTCCAAGGAAAGATCAGTTTGCATCCGCATCAGGCATTCTTAGATACTCATTCAAAGATGTTCAGAAGGCAACACAAAATTTCACAACTGTCTTGGGACAAGGATCATTTGGCACGGTTCATAAAGCAACAATGCCTACTGGCGAGGTAGTAGCTGTGAAGGTGCTTAGTTCTGATTCCAAACAAGGGGAGAAAGAATTCAAAACAGAGGTACTTTTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATATTGTGTAGATAGAGGACAACGTATTTTGATTTATGAGTTCATGAGCAATGGAAGTCTAGAAAGGCTTATACATGGTGATGAAAGGGTTTTAAGTTGGGATGAAAGGCTGCAAATTTCTGTTGATATTTCACATGGAATTGAATACCTTCATGAAGGAGCAGTCCCGCCCGTCATACATCGTGATTTGAAATCTGCCAATATATTGTTAGATCACTTAATGCGAGCTAAGGTGGCTGATTTTGGGCTCTCAAAGGAAGAAATCTTTGATGGGCGAAAGTCTGGCTTGAAAGGTACATATGGCTACATGGACCCATCATACGTCTCCACTTCCAAGTTCACAATGAAAAGTGACATTTACAGCTTCGGTATCATCATTTTCGAGCTCATCACTGCCATTCACCCTCAACAGAACTTGATGGAATACATTAACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATACTTGACAAGAAACTGGTGGGAAAATGCAACATTGAAGAGGTGAGGAAGCTTGCTAAGATTGGACACAAGTGCTTACACAAAACACCCAGAAAGCGTCCTTCAATTGGAGAGGTTTCACAGGCTATATCCAGTATAAGACAGAGACGGCTTCTAAAAGAAAACACCATGTCATTTACTGGTTCTAGCATTTCCAGAGCTTTGAGCCGACTTGAGGAGCAACAGGTTGAGTTAAGTAGAATGGCTACCATGGCCCATTAA 1437 0.4078 MFNISIGGSRKSYSYEDFLASDKVWCFYYSSTSWLKHCKPLWHEFLAILFRWLNVKRDQIMVHGTNLVVLGVSAGLAFGILIAYLICLAVKWRKNRAHLRRCANEHSATTLPIRTNEVETSTDFSASLTSTIAASMSENPQKGSRLSWWKRPRKDQFASASGILRYSFKDVQKATQNFTTVLGQGSFGTVHKATMPTGEVVAVKVLSSDSKQGEKEFKTEVLLLGRLHHRNLVNLLGYCVDRGQRILIYEFMSNGSLERLIHGDERVLSWDERLQISVDISHGIEYLHEGAVPPVIHRDLKSANILLDHLMRAKVADFGLSKEEIFDGRKSGLKGTYGYMDPSYVSTSKFTMKSDIYSFGIIIFELITAIHPQQNLMEYINLAAMDYDGVDGILDKKLVGKCNIEEVRKLAKIGHKCLHKTPRKRPSIGEVSQAISSIRQRRLLKENTMSFTGSSISRALSRLEEQQVELSRMATMAH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2922 478 PIRSF TyrPK_CSF1-R 173 262 - -
Mibi02g2922 478 PIRSF TyrPK_CSF1-R 252 476 - -
Mibi02g2922 478 PIRSF TyrPK_CSF1-R 56 98 - -
Mibi02g2922 478 FunFam serine/threonine-protein kinase PBS1-like 149 251 - -
Mibi02g2922 478 CDD STKc_IRAK 182 433 - -
Mibi02g2922 478 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 252 459 - -
Mibi02g2922 478 ProSiteProfiles Protein kinase domain profile. 176 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g2922 478 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 64 450 - -
Mibi02g2922 478 Gene3D Transferase(Phosphotransferase) domain 1 252 456 - -
Mibi02g2922 478 SUPERFAMILY Protein kinase-like (PK-like) 150 433 IPR011009 -
Mibi02g2922 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Mibi02g2922 478 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Mibi02g2922 478 Gene3D Phosphorylase Kinase; domain 1 144 251 - -
Mibi02g2922 478 Pfam Protein tyrosine and serine/threonine kinase 178 433 IPR001245 GO:0004672|GO:0006468
Mibi02g2922 478 SMART serkin_6 176 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2922 Mibi-ChrMibi02 50715485 50720966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2922 167 442 Receptor kinase-like Gene Family AT1G67720 43.599 1.07e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Mibi02g2922 PK_Tyr_Ser-Thr 4e-48 CL0016