Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi02g2832 | ATGGCCACTTCCCAACATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTATCATTCAGACTAGTCATTGATAGAGAAACTGGAAAACCTAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAAACAGCTCTAAGTGCTCGTCGTAACCTACAGGGCTATGAGATTAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGTGCCGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGTCGGCAAATGTTGACCCTCAGAAACAAATAGCTGGGCCAGTCGTTCATGGGGAAGCTGCCCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACAGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGTATCCAGTCAAATCAAAATGGTTTGCGAGTTCAGTCAGGAATGGCACATGACCCTTTAACTCTGCATCTGGCGAAACTATCCAGAAATCAGCTGACTGATATTATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAATCAGCTCGTCAGTTGTTACTTTCTAGACCACAGTTGTCTAAGGCTCTTTTTCAGGCACAGATAATGCTCGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTACTGGTAAAACCTCACAGCCTCCTGTAGATGAAAGCCAGCTAGGTCAGTTGGCAGTGCTTCAATCACTATCCGGGCTGCCTTCTCATACACAGATCAAGTTGCAGTCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCTTTGGTCCCCAATCAATTAGCTGCACACCCAAGGCCTCCTTTCCAGCCTCGAATGCAGCTTCCACAACACCCAAGCAACCCAGTGGTACAGCTGGGTACATTGCCAGGACATTCTAGTTCATCTCTTCCTTCTGTCCGTCCCCAGTCTTCATTCAGTTTGCCTGTTAGACCTACAAATCAGCCGGGATTGTCTGTTGGACCACCAATTCAGCTGACAACTTCAACTCCTCTGACTCAGCAAGTGCACATGCTGCAACATTCAGGGTTTGGTAACCCAAGTGTAGGACAAAATATTCGGATTCGTCCAGATGCAGGCTTTCAGCCTGGCCCGTCCATGTCATCAGGTATCCCTCTGTCAATTGGTATGGAAGCTGATAGATCAGCTAAAGTTATTGAAGATTCTAATTGGGGCAAGAAAAGTAGTGCATATTCAAACATTGCTCTTGCATCAAGAGAGAAAACAAATGAGCCTTCAGAACCATTTAGCCGTCCTTCTAAGCAGATTAAATTGGATGATGGAAGGAGCTCCTCTTTCTCTGCAGGAGTCACAAATGTGCCTGTTCCTACAGGATCTTCCCATGTTCTTGGAAGTGTGCCATTGACTGTAAATGCAACTTCCAAATCGGAAGCACGATATCCTGAGCAACAGTCCTCTCAGGCTCAGCTTCCGCCCGATGTGGAATCGGTTTTACTACAGCAAGTGTTGAGTCTAACGCCTGAGCAATTGAGTTCTTTACCGCCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGACCCAGCCGTCATAG | 1674 | 0.4677 | MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLSANVDPQKQIAGPVVHGEAAHHQPIGLHIAITAATVMEAALGGPQSGIQSNQNGLRVQSGMAHDPLTLHLAKLSRNQLTDIISELKAMATHNKESARQLLLSRPQLSKALFQAQIMLGMVTPQVLQMPNLRQVTGKTSQPPVDESQLGQLAVLQSLSGLPSHTQIKLQSGLMPNIQETQASALHHNSLVPNQLAAHPRPPFQPRMQLPQHPSNPVVQLGTLPGHSSSSLPSVRPQSSFSLPVRPTNQPGLSVGPPIQLTTSTPLTQQVHMLQHSGFGNPSVGQNIRIRPDAGFQPGPSMSSGIPLSIGMEADRSAKVIEDSNWGKKSSAYSNIALASREKTNEPSEPFSRPSKQIKLDDGRSSSFSAGVTNVPVPTGSSHVLGSVPLTVNATSKSEARYPEQQSSQAQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQTQPS | 557 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 460 | 487 | - | - | |
Mibi02g2832 | 557 | Gene3D | - | 1 | 111 | IPR012677 | - | |
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 310 | 341 | - | - | |
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 84 | 108 | - | - | |
Mibi02g2832 | 557 | Gene3D | - | 154 | 230 | - | - | |
Mibi02g2832 | 557 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 102 | IPR035979 | GO:0003676 | |
Mibi02g2832 | 557 | FunFam | Related to Cleavage stimulation factor | 510 | 552 | - | - | |
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 530 | 557 | - | - | |
Mibi02g2832 | 557 | Pfam | Transcription termination and cleavage factor C-terminal | 519 | 551 | IPR026896 | GO:0031124 | |
Mibi02g2832 | 557 | Gene3D | - | 509 | 556 | IPR038192 | - | |
Mibi02g2832 | 557 | CDD | RRM_CSTF2_CSTF2T | 9 | 83 | - | - | |
Mibi02g2832 | 557 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 3 | 553 | - | - | |
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 294 | 341 | - | - | |
Mibi02g2832 | 557 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Mibi02g2832 | 557 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 164 | 228 | IPR025742 | - | |
Mibi02g2832 | 557 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Mibi02g2832 | 557 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Mibi02g2832 | 557 | FunFam | Cleavage stimulating factor 64 | 1 | 116 | - | - | |
Mibi02g2832 | 557 | FunFam | Cleavage stimulating factor 64 | 155 | 230 | - | - | |
Mibi02g2832 | 557 | MobiDBLite | consensus disorder prediction | 438 | 487 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi02g2832 | Mibi-ChrMibi02 | 47945516 | 47952098 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi02g2832 | 9 | 82 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.081 | 1.48e-07 | 52.4 |