Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2832 ATGGCCACTTCCCAACATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTATCATTCAGACTAGTCATTGATAGAGAAACTGGAAAACCTAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAAACAGCTCTAAGTGCTCGTCGTAACCTACAGGGCTATGAGATTAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGTGCCGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGTCGGCAAATGTTGACCCTCAGAAACAAATAGCTGGGCCAGTCGTTCATGGGGAAGCTGCCCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACAGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGTATCCAGTCAAATCAAAATGGTTTGCGAGTTCAGTCAGGAATGGCACATGACCCTTTAACTCTGCATCTGGCGAAACTATCCAGAAATCAGCTGACTGATATTATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAATCAGCTCGTCAGTTGTTACTTTCTAGACCACAGTTGTCTAAGGCTCTTTTTCAGGCACAGATAATGCTCGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTACTGGTAAAACCTCACAGCCTCCTGTAGATGAAAGCCAGCTAGGTCAGTTGGCAGTGCTTCAATCACTATCCGGGCTGCCTTCTCATACACAGATCAAGTTGCAGTCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCTTTGGTCCCCAATCAATTAGCTGCACACCCAAGGCCTCCTTTCCAGCCTCGAATGCAGCTTCCACAACACCCAAGCAACCCAGTGGTACAGCTGGGTACATTGCCAGGACATTCTAGTTCATCTCTTCCTTCTGTCCGTCCCCAGTCTTCATTCAGTTTGCCTGTTAGACCTACAAATCAGCCGGGATTGTCTGTTGGACCACCAATTCAGCTGACAACTTCAACTCCTCTGACTCAGCAAGTGCACATGCTGCAACATTCAGGGTTTGGTAACCCAAGTGTAGGACAAAATATTCGGATTCGTCCAGATGCAGGCTTTCAGCCTGGCCCGTCCATGTCATCAGGTATCCCTCTGTCAATTGGTATGGAAGCTGATAGATCAGCTAAAGTTATTGAAGATTCTAATTGGGGCAAGAAAAGTAGTGCATATTCAAACATTGCTCTTGCATCAAGAGAGAAAACAAATGAGCCTTCAGAACCATTTAGCCGTCCTTCTAAGCAGATTAAATTGGATGATGGAAGGAGCTCCTCTTTCTCTGCAGGAGTCACAAATGTGCCTGTTCCTACAGGATCTTCCCATGTTCTTGGAAGTGTGCCATTGACTGTAAATGCAACTTCCAAATCGGAAGCACGATATCCTGAGCAACAGTCCTCTCAGGCTCAGCTTCCGCCCGATGTGGAATCGGTTTTACTACAGCAAGTGTTGAGTCTAACGCCTGAGCAATTGAGTTCTTTACCGCCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGACCCAGCCGTCATAG 1674 0.4677 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLSANVDPQKQIAGPVVHGEAAHHQPIGLHIAITAATVMEAALGGPQSGIQSNQNGLRVQSGMAHDPLTLHLAKLSRNQLTDIISELKAMATHNKESARQLLLSRPQLSKALFQAQIMLGMVTPQVLQMPNLRQVTGKTSQPPVDESQLGQLAVLQSLSGLPSHTQIKLQSGLMPNIQETQASALHHNSLVPNQLAAHPRPPFQPRMQLPQHPSNPVVQLGTLPGHSSSSLPSVRPQSSFSLPVRPTNQPGLSVGPPIQLTTSTPLTQQVHMLQHSGFGNPSVGQNIRIRPDAGFQPGPSMSSGIPLSIGMEADRSAKVIEDSNWGKKSSAYSNIALASREKTNEPSEPFSRPSKQIKLDDGRSSSFSAGVTNVPVPTGSSHVLGSVPLTVNATSKSEARYPEQQSSQAQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQTQPS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2832 557 MobiDBLite consensus disorder prediction 460 487 - -
Mibi02g2832 557 Gene3D - 1 111 IPR012677 -
Mibi02g2832 557 MobiDBLite consensus disorder prediction 310 341 - -
Mibi02g2832 557 MobiDBLite consensus disorder prediction 84 108 - -
Mibi02g2832 557 Gene3D - 154 230 - -
Mibi02g2832 557 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Mibi02g2832 557 FunFam Related to Cleavage stimulation factor 510 552 - -
Mibi02g2832 557 MobiDBLite consensus disorder prediction 530 557 - -
Mibi02g2832 557 Pfam Transcription termination and cleavage factor C-terminal 519 551 IPR026896 GO:0031124
Mibi02g2832 557 Gene3D - 509 556 IPR038192 -
Mibi02g2832 557 CDD RRM_CSTF2_CSTF2T 9 83 - -
Mibi02g2832 557 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 553 - -
Mibi02g2832 557 MobiDBLite consensus disorder prediction 294 341 - -
Mibi02g2832 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Mibi02g2832 557 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 228 IPR025742 -
Mibi02g2832 557 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mibi02g2832 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mibi02g2832 557 FunFam Cleavage stimulating factor 64 1 116 - -
Mibi02g2832 557 FunFam Cleavage stimulating factor 64 155 230 - -
Mibi02g2832 557 MobiDBLite consensus disorder prediction 438 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2832 Mibi-ChrMibi02 47945516 47952098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2832 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.48e-07 52.4