Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2812 ATGCCCACACCACCATTCCATTCCTCAAACTTCCTGCAAATCCCAGTAACGATTCCCCTAAAGCCCCAGAAATCAGTTGATATATCTGAGAGGGGTCGTGATAATGAGGGGAAGAAATCGGAGAAGAAGAAGTTGGTGGGGAGTTTTGAGGAATTGGGGCTCAGTGATGAGGTAATGGAAGCTGTGAGGGAGATGAATATTGAGGTTCCCTCTGAGATTCAGTGTATTGGTATCCCTGCTGTATTGGAAGGGAAGAGTGTTGTTTTGGGATCTCATACTGGTTCTGGAAAGACCCTTGCTTATATGCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAAGAATTGAATGGATTACTTATGAAGCCCAGGTGTCCACAGGCTGTTTTGCTATGCCCTACGAGGGAATTGTCTGAGCAGGTATTTCAAGTTGCGAAATCTATCAGCCACCATGCAAGATTAAGGTCTACAATGGTAAGTGGGGGTGGCCGTCTCAGGCCTCAAGAGGATTCGTTAAATAACCCCATTGACTTGGTGTTTGGTACTCCGGGTAGAATTCTGCAGCACATTGAGGAAGGCAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCGGACACAACGTTTGATCGAGGTTTTGGTCCTGATATACGTAAGTTTATTGGCCCACTAAAGCATCGTTCATCGAAACCTGATGGCCTGGGTTTTCAGACTATCTTGGTTACTGCAACCATGACTAAGGCAGTGCAAAAGCTGGTTGATGAGGAGTTTCAAGGCATTGTGCATCTACGAACATCAACACTACATAAAAAGATTGCTGCTGCTCGTCATGATTTTATTAAGTTGTCAGGCTCTGAAAACAAGCTGGAGGCATTGCTTCAGGTTCTGGAACCAAGCCTGGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACATTGAATTCTAGTCGTGCAGTGGATCATTTTCTCAGTGAGAATCAGATATCTACTGTCAATTACCATGGAGAGAGGTACCAGCAGAGAAAAGGGTTGAAAACCTCAATAAATTTAAAAGCGATGAAGATGATTGCCCTACTTTAG 1086 0.4411 MPTPPFHSSNFLQIPVTIPLKPQKSVDISERGRDNEGKKSEKKKLVGSFEELGLSDEVMEAVREMNIEVPSEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYMLPLVQLLRRDEELNGLLMKPRCPQAVLLCPTRELSEQVFQVAKSISHHARLRSTMVSGGGRLRPQEDSLNNPIDLVFGTPGRILQHIEEGNMVYGDIKYLVLDEADTTFDRGFGPDIRKFIGPLKHRSSKPDGLGFQTILVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKIAAARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGERYQQRKGLKTSINLKAMKMIALL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2812 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 36 343 - -
Mibi02g2812 361 Pfam DEAD/DEAH box helicase 72 254 IPR011545 GO:0003676|GO:0005524
Mibi02g2812 361 Gene3D - 20 266 IPR027417 -
Mibi02g2812 361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 265 IPR014001 -
Mibi02g2812 361 Gene3D - 276 354 IPR027417 -
Mibi02g2812 361 CDD DEADc 58 257 - -
Mibi02g2812 361 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Mibi02g2812 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 259 IPR027417 -
Mibi02g2812 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 343 IPR027417 -
Mibi02g2812 361 SMART ultradead3 66 285 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2812 Mibi-ChrMibi02 42666386 42670158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2812 46 344 Eukaryotic Initiation Factors Gene Family AT3G19760 26.403 1.12e-25 105