Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2809 ATGGCGGGAGCTACAGGTAGAGCCCTTATCACTCTCTCTCTAAACTCCAACCTCTCTACCTTCGCACGCTTATCTCATCATGCCCACACCACCATTCCATTTCTCAAACTTCCTGCAAAACCCATTAGGGTTTTTCTAGGGTTTAGGCACTTCTGTTCTGTAACTTCCACCACCGCCACGGCCACCATTTCCGAAACAACGGAATCCATTGATCCCGACCGAATCAAGCACTCAATTCTCCTCGAGAGACTCAGATTCAGACACCTAAAGGATTCCCCTAATGCCCCAGAAATCAAGAGTTCGAGGAAATCAGTTTCTATATCTGAGAGGGGTCGTGATAATGAGGGGAAGAAGAAGTTGGTGGGGAGTTTTGAGGAATTGGGGCTCAGTGAAGAGGTAATGGGAGCTGTGAGGGAGATGAATATTGAGGTTCCCACTGAGATTCAGTGTATTGGTATTCCTGCTGTATTGGAAGGGAAGAGTGTTGTTTTGGGATCTCATACTGGTTCTGGAAAGACTCTTGCTTATATGCTTCCCCTTGTTCAGTTGCTTAGACGGGATGAAGAATTGAATGGATTACTTATAAAGCCCAGGCGTCCCCGGGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCGAAATCTATCAGCCACCATGCAAGATTAAGGTCTACAATGGTAAGTGGGGGTGGCCGTCTGAGGCCTCAGGAGGATTCGTTAAATAACCCCATTGACTTGGTTGTTGGTACTCCGGGTAGAATTCTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCGGACACAATGTTTGATAGAGGTTTCGGTCCTGATATACGCAAGTTCATTGGCCCACTAAAGCATCGTTCATCAAAATCTGATGGCCTAGGTTTTCAGACTATCTTGGTTACTGCAACCATGACTAAGGCAGTGCAAAAGCTGGTTGATGAGGAGTTTCAAGGCATTGTGCATCTACGAACATCAACACTACATAAAAAGATTGCTGCTGCTCGTCATGATTTTATTAAGCTGTCAGGCTCTGAAAACAAGTTGGAAGCGTTGCTTCAGGTTCTGGAGCCAAGCCTGGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCAGTGGATCATTTTCTCAGTGAAAATCAGATATCTACTGTCAATTACCATGGAGAGGTACCAGCAGAGAAAAGGGTTGAAAACCTCAATAAATTTAAAAGCGATGAAGATGATTGCCCTACTTTAGTTTGCACTGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTAAGAACTCTATTGATTACCTCCACCGCACTGGCAGAACAGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGCTTGGTTGCAAAAAAAGACACAACCTTGGCCACTCGAATAGAAGAAGCAATAAAGAAGAATGAGAGCATGGAGGCTATCAGTAAAGAAAGTCTTAGGAGGGAGACTGCTAGGACCCAAATAACTCAGCAGAAGGGGAAGAATACCAAATTGGTAAAGGTTTCCAGAGGGAAAAACTCTTCAACTGTCCGTGCCACTTCCAGAAATGCAACGAAGAAGGCCTTTGAATCAAAAGTATCAAAAAGTTCTTCTAGTGGTAACACTGGTTCAAGAAAAGCATCCAAACCATTAAAATCAGTAAAGACAGGAGGGATTCAGGTTAAAAAATCCGTAAGATCTTCTGGTGCAAGTAGCCCAAAGAAAGCTTCGACGGGGAAGAAGCAAACAAGTAGAAGAGACAGTGCTAGCAAATCATCAAATTCGAAGCTGAGTGTTGTTGGTTTTAGGGGGCGGAGTTCCTCAAACAAGAAGGAAGCACAATTTTGA 1932 0.4425 MAGATGRALITLSLNSNLSTFARLSHHAHTTIPFLKLPAKPIRVFLGFRHFCSVTSTTATATISETTESIDPDRIKHSILLERLRFRHLKDSPNAPEIKSSRKSVSISERGRDNEGKKKLVGSFEELGLSEEVMGAVREMNIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYMLPLVQLLRRDEELNGLLIKPRRPRAVVLCPTRELSEQVFRVAKSISHHARLRSTMVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRSSKSDGLGFQTILVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKIAAARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAEKRVENLNKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVAKKDTTLATRIEEAIKKNESMEAISKESLRRETARTQITQQKGKNTKLVKVSRGKNSSTVRATSRNATKKAFESKVSKSSSSGNTGSRKASKPLKSVKTGGIQVKKSVRSSGASSPKKASTGKKQTSRRDSASKSSNSKLSVVGFRGRSSSNKKEAQF 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2809 643 CDD DEADc 133 332 - -
Mibi02g2809 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 487 IPR027417 -
Mibi02g2809 643 MobiDBLite consensus disorder prediction 519 577 - -
Mibi02g2809 643 MobiDBLite consensus disorder prediction 616 643 - -
Mibi02g2809 643 Gene3D - 351 583 IPR027417 -
Mibi02g2809 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 515 IPR001650 -
Mibi02g2809 643 CDD SF2_C_DEAD 353 485 - -
Mibi02g2809 643 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 64 511 - -
Mibi02g2809 643 Gene3D - 86 341 IPR027417 -
Mibi02g2809 643 MobiDBLite consensus disorder prediction 507 643 - -
Mibi02g2809 643 MobiDBLite consensus disorder prediction 92 114 - -
Mibi02g2809 643 SMART helicmild6 394 476 IPR001650 -
Mibi02g2809 643 MobiDBLite consensus disorder prediction 588 606 - -
Mibi02g2809 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Mibi02g2809 643 Pfam Helicase conserved C-terminal domain 365 476 IPR001650 -
Mibi02g2809 643 Pfam DEAD/DEAH box helicase 146 329 IPR011545 GO:0003676|GO:0005524
Mibi02g2809 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 340 IPR014001 -
Mibi02g2809 643 SMART ultradead3 141 360 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2809 Mibi-ChrMibi02 42651020 42656514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2809 121 498 Eukaryotic Initiation Factors Gene Family AT3G19760 28.238 3.14e-42 155