Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi02g2706 | ATGGCAGATCTTGCTAAGTACGGGAATGCCGACCGTGATATCGAACAGGCATTGGTAGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGGAAGGGGAAGCCCAAGTTTTATCCATTTCGACTTTCCAATGATGAATCATCTTTAGTTTGGATATCAAGTAGCGGAGAAAGACGTCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATTTGCGCCCTGAGAAAGATTATCTGTCTTTTTCACTTATTTACAACAACGGGAAGCGATCGCTTGACTTGATTTGCAAGGATAAAACTGAGGCAGAAGTTTGGATTGCTGGCCTCAAATCTCTGCTCTCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGGTGGCCTCTGTCTCGATGATAACAGGGAATTGACTTCAAATCGGCCGAGTGGAAGTTCAGTTGGTACTTCCGTAGATATTTCCTCTCCTGAAGTTTCTTTGAGTCTTAATTCAAATTCTCCTTCAAAGTCCTTCAGTCTTGAGAATACTTCTAATTCTGAAAGGTCACATGCACCATCTGATCCAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTAAGTGTATCAAGTGCCCCAAGTACATCTAGTCATGGGTCAGCACCAGATGATTGTGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGTGCTGATAGAAATGCTAACTATTTTAGCTCAAGGGCGGATGTCCTTCTACCTAGACCATTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAAACATGCTGCTTTAGTCACCAGGCAAAGTGAAATTTTTACTTGGGGTGAAGAATCTGGAGGTCGCCTTGGCCATGGTGTTGAGAAGAACGTGCTACAACCCCATTTAGTTGAAGCGTTGGCTTTGACAACTGTTGATTTTGTTTCCTGTGGTGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAATTATATACTTGGGGTGATGGTACCCATAATGCTGGTCTTCTTGGTCATGGAAGTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTGGAGGGACTTAAGGTTTCTTTAGTCTCCTGTGGTCCATGGCACACAGCCTTGGTAACTTCAAGTGGGCAGCTTTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGACAGGGAAAACGTTTCCTATCCTAAAGAAGTAGAATCCTTATCTGGGCTGAGGACAATAGCTGTTGCATGTGGTGTGTGGCATACTGCAGCTGTTGTAGAAGTTATAGTGACACAATCCAGTGCTAGTGTATCATCAGGTAAATTGTTTACCTGGGGTGATGGAGACAAAAATCGCCTTGGACACGGGGACAAGGAAGCCCGGCTGAAACCAACTTGTGTGCCTTCGCTTATTGACTACAATTTTTATAAAATTGCTTGTGGACACAGCTTGACTGTGGGCTTGACGACATCGGGACATGTTTTTACAATGGGTAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGGTGCCTTGCTTGGTTGAAGACAAACTTGCTGGAGAATCTGTTGAAGAAATTTCATGTGGTGCATATCATGTTGCAGTTTTAACATCTAAAAACGAAGTTTATACTTGGGGAAAGGGTGCCAATGGGAGGTTGGGTCATGGAGATGTTGAAGACAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGGCATGTGAAGTATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCGGAACAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGATTCACTCGAAAGAGGCACAATTGTTATAATTGTGGACTTGTACACTGCCATGCATGCAGTTCAAGGAAAGCCCTAAGAGCAGCCTTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATTCAAAACTAAGCAAGGTGGCAGAAGTTGGCAGTAATAATAGGAAGAATGTGATGCCACGTTTGTCTGGTGAAAACAAGGACAGGTTAGATAAGTCTGAGATAAGAGCATCCAAGGTGGTTCCCTCTAATATGGATCTGATAAAGCAGCTAGATAGTAAAGCAGCCAAACAGGGGAAGAAGGCTGATACGTTTGCCCTAGTTCGCACCTTACAAGCACCTTCAATGCTGCAACTGAAGGATGTGGTCTTATCTACTGCTGCTGATCTGAGACAAACAGCTCCACGACCAGTTCTTGCACCATCTGGAGTAAGTTCCAGATCCGTGTCCCCTTTCTCTAGACGGCCAAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACATCTGGACTTTCTTTTTCCAAAAACATTGCTGACAGTTTAAAGAAAACAAATGAACTTTTAAATCAAGAAGTGACAAAACTACATTCTCAGGTTGAGAGCCTGAGGCAAAGATGTGAACGACAAGATTTGGAGCTTCAAAGGTCAGCAAAGAAAACTCAGGAAGCTATGGCACTTGCTGCTGAGGAGTCTGCTAAATGTAAAGCTGCAAAAGAAGTCATAAAGTCGCTTACAGCTCAGCTCAAAGGTCTGGCTGAGAGGCTTCCTCCTGGAGCCAATGATGCCGAAAGCATAAGACCAACTTACCTACCAAATGGTTTGGAGTTAAATGGCACCCACAATCCTGACTCTAATGGGGGGCGCCACTCCCGAGCTGAGTCAATCGGTGCCTCTAGCTTGGACTCTGTAGGGCTTGAGTCATCTTTGTCAAATAGACTTGAGGGAAATTTATCTGGAGCATATGGAACTAATCTTTACCAGCAAAACAGGCAGCTTGTGACCTCCAATGGGACTAATGAACCTTCAGACGTTAAATTGCCAAATGGTGGCATGACTCCCATAGGCAATCATATGTCAGATGCCATTGATAGTAGGGATTCAGGTCATTTACAAGATGGAGAGGGTGGTTTGAGATCAAATGATAACGTACTGGCTGCAAACAGTAATCAAATTGAGGCGGAATGGATCGAACAGTATGAACCTGGTGTGTATATAACACTTACGGCCCTTAAGGATGGAACACGAGATTTAAAACGAGTGCGCTTCAGCCGGAGAAAATTTGGGGAGCATCAAGCAGAGACATGGTGGTCAGAGAATCGTGAGAAGGTATACGAAAGATACAATGTTCGCAGCACTGACAAATATTCGGGCCAAGCAACTCGAAAAGCAGAAGGCGCTGCTTCACCCGTTGCCCAATCTTAG | 3360 | 0.4417 | MADLAKYGNADRDIEQALVALKKGAQLLKYGRKGKPKFYPFRLSNDESSLVWISSSGERRLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKTEAEVWIAGLKSLLSSGQGGRSKIDGWSDGGLCLDDNRELTSNRPSGSSVGTSVDISSPEVSLSLNSNSPSKSFSLENTSNSERSHAPSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVGADRNANYFSSRADVLLPRPLESNVVLDVHHIACGVKHAALVTRQSEIFTWGEESGGRLGHGVEKNVLQPHLVEALALTTVDFVSCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGSDISHWIPKRIAGPLEGLKVSLVSCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEISCGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHACSSRKALRAALAPNPGKPYRVCDSCYSKLSKVAEVGSNNRKNVMPRLSGENKDRLDKSEIRASKVVPSNMDLIKQLDSKAAKQGKKADTFALVRTLQAPSMLQLKDVVLSTAADLRQTAPRPVLAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNIADSLKKTNELLNQEVTKLHSQVESLRQRCERQDLELQRSAKKTQEAMALAAEESAKCKAAKEVIKSLTAQLKGLAERLPPGANDAESIRPTYLPNGLELNGTHNPDSNGGRHSRAESIGASSLDSVGLESSLSNRLEGNLSGAYGTNLYQQNRQLVTSNGTNEPSDVKLPNGGMTPIGNHMSDAIDSRDSGHLQDGEGGLRSNDNVLAANSNQIEAEWIEQYEPGVYITLTALKDGTRDLKRVRFSRRKFGEHQAETWWSENREKVYERYNVRSTDKYSGQATRKAEGAASPVAQS | 1119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi02g2706 | 1119 | Pfam | FYVE zinc finger | 625 | 691 | IPR000306 | GO:0046872 | |
| Mibi02g2706 | 1119 | Coils | Coil | 824 | 865 | - | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 351 | 405 | IPR000408 | - | |
| Mibi02g2706 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 444 | 454 | IPR000408 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | BRX domain profile. | 1039 | 1094 | IPR013591 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 629 | 691 | IPR017455 | - | |
| Mibi02g2706 | 1119 | SUPERFAMILY | RCC1/BLIP-II | 236 | 626 | IPR009091 | - | |
| Mibi02g2706 | 1119 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 631 | 699 | - | - | |
| Mibi02g2706 | 1119 | MobiDBLite | consensus disorder prediction | 783 | 817 | - | - | |
| Mibi02g2706 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 285 | 295 | IPR000408 | - | |
| Mibi02g2706 | 1119 | MobiDBLite | consensus disorder prediction | 148 | 229 | - | - | |
| Mibi02g2706 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 392 | 402 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 622 | 697 | IPR013083 | - | |
| Mibi02g2706 | 1119 | MobiDBLite | consensus disorder prediction | 147 | 230 | - | - | |
| Mibi02g2706 | 1119 | CDD | PH_PLC_plant-like | 12 | 124 | - | - | |
| Mibi02g2706 | 1119 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 208 | 458 | - | - | |
| Mibi02g2706 | 1119 | MobiDBLite | consensus disorder prediction | 901 | 939 | - | - | |
| Mibi02g2706 | 1119 | Gene3D | - | 459 | 621 | IPR009091 | - | |
| Mibi02g2706 | 1119 | SUPERFAMILY | PH domain-like | 13 | 123 | - | - | |
| Mibi02g2706 | 1119 | Pfam | Transcription factor BRX N-terminal domain | 875 | 909 | IPR027988 | - | |
| Mibi02g2706 | 1119 | CDD | FYVE_like_SF | 634 | 687 | - | - | |
| Mibi02g2706 | 1119 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 459 | 630 | - | - | |
| Mibi02g2706 | 1119 | Coils | Coil | 873 | 900 | - | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 299 | 350 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1038 | 1093 | IPR013591 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | PH domain profile. | 91 | 124 | IPR001849 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 408 | 422 | IPR000408 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 351 | 367 | IPR000408 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 301 | 317 | IPR000408 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 510 | 528 | IPR000408 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 568 | 589 | IPR000408 | - | |
| Mibi02g2706 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 392 | 408 | IPR000408 | - | |
| Mibi02g2706 | 1119 | SMART | fyve_4 | 623 | 692 | IPR000306 | GO:0046872 | |
| Mibi02g2706 | 1119 | SUPERFAMILY | FYVE/PHD zinc finger | 625 | 698 | IPR011011 | - | |
| Mibi02g2706 | 1119 | Gene3D | - | 13 | 129 | IPR011993 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 469 | 520 | IPR000408 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 521 | 572 | IPR000408 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 573 | 624 | IPR000408 | - | |
| Mibi02g2706 | 1119 | MobiDBLite | consensus disorder prediction | 1099 | 1119 | - | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 300 | 347 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 405 | 454 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 520 | 569 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 351 | 401 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 574 | 621 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 468 | 515 | IPR000408 | - | |
| Mibi02g2706 | 1119 | Gene3D | - | 181 | 458 | IPR009091 | - | |
| Mibi02g2706 | 1119 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 896 | - | - | |
| Mibi02g2706 | 1119 | Pfam | Pleckstrin homology domain | 15 | 123 | IPR001849 | - | |
| Mibi02g2706 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 406 | 457 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi02g2706 | Mibi-ChrMibi02 | 37814607 | 37822197 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi02g2706 | 1040 | 1110 | Major Intrinsic Protein MIP | AT1G31880 | 45.070 | 3.95e-14 | 73.6 |