Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2619 ATGGGAAGGGGTAGGGTTGAGCTGAGGCGTATTGAGAACAAAATCAGCCGGCAAGTGACGTTTTCAAAGAGGCGAAGTGGACTGTTCAAGAAAGCTCAAGAAATCTCTGTGCTTTGTGATGCTCAAGTTGCTCTTATAATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCAAGCTTGGATGGAGTTCTGGAACGATATGAGAGACAAGCGCACACTGAACAACTAGCTGAAGCTAACAATAATGAATCCCAGGGAAACTTGTCCTTGGAGTTCTACAAACTTACCACCAAGGCTAAAATCTTGGAGAAGAACATTAGGAACTATGGAGGATATGATCTTGATATCTTGAGTTTGAGAGAGCTTCAGAACTTAGAGAACCAGATGGACACAGCTATAAAGCGTATTCGAACAAGAAAGAACCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGAGCATTGCAGGAGCAAAACAGCGTATTAGCAAAGAAGGTGAAGGAGAAAGAGAAATCACTGACTGAAAATCCACAGAAGGAGAGGTACCCTCAAGGACGAAATTTATCTGGCTTCAATGCACCTGAACCACAGCTACAACTTCCTACTCTGACTCTCGGTGCGGGCTTACAAGGAAGAGGATCAGAAGAAGATGAAGAGGTGGAAGCTGATCAGCCGGCACCCAGAAGCAGCACTATCATACCACCATGGATGTTGCATCACTTGATCCGATAG 750 0.4467 MGRGRVELRRIENKISRQVTFSKRRSGLFKKAQEISVLCDAQVALIIFSTKGKLFEFSSDSSLDGVLERYERQAHTEQLAEANNNESQGNLSLEFYKLTTKAKILEKNIRNYGGYDLDILSLRELQNLENQMDTAIKRIRTRKNQLMNESISEHQKKARALQEQNSVLAKKVKEKEKSLTENPQKERYPQGRNLSGFNAPEPQLQLPTLTLGAGLQGRGSEEDEEVEADQPAPRSSTIIPPWMLHHLIR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2619 249 MobiDBLite consensus disorder prediction 171 240 - -
Mibi02g2619 249 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mibi02g2619 249 Coils Coil 125 178 - -
Mibi02g2619 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 MobiDBLite consensus disorder prediction 184 205 - -
Mibi02g2619 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Mibi02g2619 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi02g2619 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mibi02g2619 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mibi02g2619 249 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi02g2619 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi02g2619 249 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2619 Mibi-ChrMibi02 33989722 34001069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2619 1 213 MADS-box Gene Family AT1G26310 54.839 9.40e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi02g2619 K-box 1.5e-21 No_clan