Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi02g2517 | ATGACCTTTGGCTGCATCTTATTACTTGCAGGCTTCTTCACCATCTACCTCTGGTATTGCTCCGACACAAGGTTCGCCGCGGCGGCCGGAATCCCGACCGGGGCCTTCGCCACTTGCTGCTCTTGTGGTCCCCACGGCATCGACCAAAAGTCACTAGACACATTCCCTGTCTTCACCTATTCCACATTAAAAAACCTAAAGCCTAGGATTATTAATGTTCCATTGAATTGTACGGTTTGCCTTAACGAGTTCACTCACGATGACTCGCTCAGATTGCTTCCAAAATGTAAACATGTCTTCCACCGTGAATGTATTGACACATGGTTAGCCTCACATGTGACTTGTCCCCTTTGCCGCCTGTCGCCGATGTCACCCGGGCACGAGATGATAGTGATTCCGAATGAGGTGAATAATGGAGACCAGGAGTTTGGTGGGAGTTCTATGAGGGGAATGAATGTTATTGGTTCTGGAGAAACAAGTTTGAGGAGGTGTCATACAACGACGGGTCATTTTTCGGGTTTTCGGTTGCCGGTTCCGGCGAATTATGGCCGGTCGGTGAGTGATTCCTCTGAGTTTTATGGGAGACATGGTGAAGGAAGTAGGAGAGATCTGTTGGGTCATTGTTCATTGGCAAATGCATTTGTTTCTCATGGTAATGTGTCGTCTTCTTCTTCTTCTTCCTCACCTCAAAATATTACATTACAAGTAGAAAGGAGATGA | 720 | 0.4708 | MTFGCILLLAGFFTIYLWYCSDTRFAAAAGIPTGAFATCCSCGPHGIDQKSLDTFPVFTYSTLKNLKPRIINVPLNCTVCLNEFTHDDSLRLLPKCKHVFHRECIDTWLASHVTCPLCRLSPMSPGHEMIVIPNEVNNGDQEFGGSSMRGMNVIGSGETSLRRCHTTTGHFSGFRLPVPANYGRSVSDSSEFYGRHGEGSRRDLLGHCSLANAFVSHGNVSSSSSSSSPQNITLQVERR | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi02g2517 | 239 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 41 | 167 | - | - | |
| Mibi02g2517 | 239 | SMART | ring_2 | 77 | 118 | IPR001841 | - | |
| Mibi02g2517 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 124 | IPR013083 | - | |
| Mibi02g2517 | 239 | FunFam | E3 ubiquitin-protein ligase ATL6 | 37 | 124 | - | - | |
| Mibi02g2517 | 239 | SUPERFAMILY | RING/U-box | 76 | 122 | - | - | |
| Mibi02g2517 | 239 | Pfam | Ring finger domain | 76 | 119 | IPR001841 | - | |
| Mibi02g2517 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 77 | 119 | IPR001841 | - | |
| Mibi02g2517 | 239 | CDD | RING-H2_EL5_like | 77 | 119 | - | - | |
| Mibi02g2517 | 239 | MobiDBLite | consensus disorder prediction | 217 | 239 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi02g2517 | Mibi-ChrMibi02 | 31264196 | 31264915 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi02g2517 | 7 | 119 | Rapid Response to Elicitors | AT3G05200 | 44.248 | 1.77e-27 | 106 |