Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2507 ATGAACAAGAGAATAATATTCCCACATATCCTCGTCTTCTTCCTTCTATCATCGGCCGTTGATGCCCACTCAAATTCTCAGCCTTCGGCTCCTCCAAGTGCTCCACTCCCAACCTTGGACGTATCATTCACTCCCGTAATTGTCGCTCTTGTTTGCGTCTTCTTCTTCATCGGCGTCTTCGCCGTCTACCTCCACAACTGCTCCGACATAGAATTCGACGCCGGAAACCCGACCGGAGTCACAGCCAACCGTTCTTCAAGTCATCCCCAAGGCATAGACCCAAAATTACTCGACACCTTCCCCGTCCTCCTATACTCAACCGTGAAAAACCTCAAATCCGGGATATCCCCGGAGTGCGCTGTGTGCTTGAGCGAGTTTGAATACAATGATATGCTCCGATTGCTTCCAATATGTAAACACGTGTTTCACGCTCAATGCATTGATGCGTGGTTTGCCTCCCACTTGACTTGTCCCGTTTGTCGCGTGAGGTTGAAGCCGGCGGAGGACAAAAGCAGGCAAGGTGATGATGAAGTCATAATTGTAATCCCAAATGAGGTAAATTCTCAGGAGGTGTTGGATGAAAGTTGTGAGAACATAAGGGAGATTCATTTAGGGGACAGAACAATTTTGGGAAGGTGTCATTCAACAGGTCACTCTTTGGCTTTGGGTGGAATTAAAGGAAAGGAAACAGATGTGTACAATCTCATGCTGCCGAATCTGGTGACTCACGGCGGAATGCGACGGTCGTCGAGCTACTGTGTATTCCGTGTATGGCCGGGTTATGAGGAGAGTAGTGGAGAGAATTTAATTTGA 813 0.4809 MNKRIIFPHILVFFLLSSAVDAHSNSQPSAPPSAPLPTLDVSFTPVIVALVCVFFFIGVFAVYLHNCSDIEFDAGNPTGVTANRSSSHPQGIDPKLLDTFPVLLYSTVKNLKSGISPECAVCLSEFEYNDMLRLLPICKHVFHAQCIDAWFASHLTCPVCRVRLKPAEDKSRQGDDEVIIVIPNEVNSQEVLDESCENIREIHLGDRTILGRCHSTGHSLALGGIKGKETDVYNLMLPNLVTHGGMRRSSSYCVFRVWPGYEESSGENLI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2507 270 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Mibi02g2507 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 173 - -
Mibi02g2507 270 SMART ring_2 119 160 IPR001841 -
Mibi02g2507 270 SUPERFAMILY RING/U-box 99 167 - -
Mibi02g2507 270 Pfam Ring finger domain 118 161 IPR001841 -
Mibi02g2507 270 CDD RING-H2_PA-TM-RING 118 161 - -
Mibi02g2507 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 167 IPR013083 -
Mibi02g2507 270 FunFam E3 ubiquitin-protein ligase ATL6 80 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2507 Mibi-ChrMibi02 31099408 31100220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2507 10 247 Rapid Response to Elicitors AT3G05200 36.260 6.74e-38 135