Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2500 ATGGAGGAGCACATTCGGAAGAATCCTTCAGACATGGTTGGTGAAGCTAAAAATCAAATTGAATACCACCTCCAAGTAGCTAAAAAAGAGGTACAAGATGAAGAAGATGGATCATGTGAAGAACTAGAAGACAACCCTGTTGAAGAAGGTGAACAAAAGCAGCTAGAAGAAAAAACTCCAAATGGGAATGATCACAAATCAGGATTTGTTAAATCAAATGAAAATAAGAGGTGTCTGAATGCTGCATCAGGTGAATTAAGTACTTTGCTATGCAACCAGTCACAAAAGAAGTGCAAGCAAGTGGATTCTTCTGGTCTGAAATTAGAATCCAGACCTTCAGAATTGGAGCTTAATAACGAATCTGTCACTGCAGTGGCATCTGTTGATAGTTGTACTCCCAAAGAAGGTACTGGAAGCTCTGGAAAACGAACGCGCAGCAGATGGGAACCACCGTCTGAGGATGATAGTGCAAAAGACAGTCAAACTTGCAAGAAGAAGAAAACCAGGTGGTCCAATGAGGACGCTCAACTACAAATGCTGGGGCCACTTCAGCTGCCTGATTTCACGAAAGATTTTCTTGTTGGATATGAGAATAATCCTGAAATTCAAGGGCTGAAAGTTGAGCTTGTTGAGATTAATAGAAGATTGCTTGGACATCTTCATGATGATAGGCTTGAGGAGGAGAGATCTCCTTCACCAGAACCTGTAGATGATGACCTTGGCACCAGAATAAGTACAAGAGAAGCAAGACTTCGTCAGAAACTTGTCCAGGAACGTCAAAATATCATATCAAAATTGATCAAATCAAACCAAAGTTTCAGCACTCCTCCTAAATACAAGCCTTCAAAACTCTTCAAGAAACTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGTCCTCGCGGAAACACATTGAAGAGAATGGAAAATGAAACTGGGGCCAAGATTTATATAAGAGGAAGAGGATGCTCAAAAACATCCAACACATTTTCCTCTTCAAAAGAGGACTTACATGTGTATATAGAAGCAGACAACAAAAATGCTCTGGATGCAGCAGTTGCCATGGTTGAAAAATTGCTAATCCCTGTTGAAGGAAGAAATGAGCACAAGGCAGCTCAATTAAGGGAGCTGGCCAAGCTGAATGGAACAGCTAGGGATGAAAATGTGTGCTGTGTTTGTGGTGATGAGGGACATATGTCATATGCCTGCCCTGACCTTCAATCAAACTTCAAAGTGAACTCATGGGGTACTTGTTTTAGTTCCACTCCTTTGAATGTGACATCTCCACAGAATGATTCTGGGCAGGGTTCTGGGTTTGGTTTTAGTTCCGGTTCAACACAGAATGGACCACGGAGGCCTGAGAAGAAATCATTGATGAATAATCTTTATGTTGGCAATCTGCCTCAAGTGTTTGACGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGCGAAGGTAATGAAGGATCCAGCTACTGGGATGTGTAGACGTTTTGGTTTTGTCGAGTTTGACAATGCCACGGATGCACAAGCAGCTGTGACTCGTATGAACGGCTTTAGAATGGATGGGAGGGTTTTGAGCGTAAGGGTAGCTAGGCTTTTGTCAAATAGTGAATTTTTAGACTTAAACATCCTTCCAAAGCACTATGGTCCTGCAGGTAAATCCCAAAGTGTTAGAAGCCGAACAGATTGGTCTCGCTCATTACATTTCATGCTGCCAGAACAATCAACTTCATTTTACAACAGCAATCCCATGAATCTGTTTTCATCCACTATGAGTTCACGGCCTTGTGATTTTATGGAGGATCAAAGCTTTTCTCCTCCAAGCTGCTGCTCAAGCTCTTCTGTTCCTAGGAATTCTGGCAAATTGCATTTTTCTGGCAACTTTACTGATCAAAATGTTTTGTTCTCTGGTAGTTCAATTTCTGAGAGTCCTGGCTCCCAAAACCGGTCATATTTTCTGACGCCGCCTCTTCATAAAGATGCACTGCCCAGTCCTGATCACATATTTGAAGATGAGAATTCTTTCCCTTCATTGCCGAGAAGGTAG 2085 0.4158 MEEHIRKNPSDMVGEAKNQIEYHLQVAKKEVQDEEDGSCEELEDNPVEEGEQKQLEEKTPNGNDHKSGFVKSNENKRCLNAASGELSTLLCNQSQKKCKQVDSSGLKLESRPSELELNNESVTAVASVDSCTPKEGTGSSGKRTRSRWEPPSEDDSAKDSQTCKKKKTRWSNEDAQLQMLGPLQLPDFTKDFLVGYENNPEIQGLKVELVEINRRLLGHLHDDRLEEERSPSPEPVDDDLGTRISTREARLRQKLVQERQNIISKLIKSNQSFSTPPKYKPSKLFKKLYIPVKEYPEYNFVGLIIGPRGNTLKRMENETGAKIYIRGRGCSKTSNTFSSSKEDLHVYIEADNKNALDAAVAMVEKLLIPVEGRNEHKAAQLRELAKLNGTARDENVCCVCGDEGHMSYACPDLQSNFKVNSWGTCFSSTPLNVTSPQNDSGQGSGFGFSSGSTQNGPRRPEKKSLMNNLYVGNLPQVFDDNRLSELFSPFGKILEAKVMKDPATGMCRRFGFVEFDNATDAQAAVTRMNGFRMDGRVLSVRVARLLSNSEFLDLNILPKHYGPAGKSQSVRSRTDWSRSLHFMLPEQSTSFYNSNPMNLFSSTMSSRPCDFMEDQSFSPPSCCSSSSVPRNSGKLHFSGNFTDQNVLFSGSSISESPGSQNRSYFLTPPLHKDALPSPDHIFEDENSFPSLPRR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2500 694 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 545 IPR000504 GO:0003723
Mibi02g2500 694 MobiDBLite consensus disorder prediction 27 72 - -
Mibi02g2500 694 MobiDBLite consensus disorder prediction 433 461 - -
Mibi02g2500 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 284 395 IPR036612 GO:0003723
Mibi02g2500 694 Gene3D - 433 548 IPR012677 -
Mibi02g2500 694 Gene3D K Homology domain, type 1 276 398 IPR036612 GO:0003723
Mibi02g2500 694 SMART kh_6 282 368 IPR004087 GO:0003676
Mibi02g2500 694 Pfam KH domain 299 364 IPR004088 GO:0003723
Mibi02g2500 694 MobiDBLite consensus disorder prediction 115 139 - -
Mibi02g2500 694 Gene3D - 198 275 - -
Mibi02g2500 694 ProSiteProfiles Zinc finger CCHC-type profile. 397 412 IPR001878 GO:0003676|GO:0008270
Mibi02g2500 694 MobiDBLite consensus disorder prediction 101 171 - -
Mibi02g2500 694 CDD SF1_like-KH 286 392 - -
Mibi02g2500 694 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 538 IPR000504 GO:0003723
Mibi02g2500 694 PANTHER RNA-BINDING PROTEIN RELATED 135 579 IPR045071 -
Mibi02g2500 694 MobiDBLite consensus disorder prediction 652 666 - -
Mibi02g2500 694 SUPERFAMILY Retrovirus zinc finger-like domains 389 415 IPR036875 GO:0003676|GO:0008270
Mibi02g2500 694 MobiDBLite consensus disorder prediction 48 72 - -
Mibi02g2500 694 Pfam Splicing factor 1 helix-hairpin domain 166 280 IPR032570 -
Mibi02g2500 694 SUPERFAMILY RNA-binding domain, RBD 451 545 IPR035979 GO:0003676
Mibi02g2500 694 MobiDBLite consensus disorder prediction 433 463 - -
Mibi02g2500 694 ProSiteProfiles Type-1 KH domain profile. 299 363 - -
Mibi02g2500 694 MobiDBLite consensus disorder prediction 140 171 - -
Mibi02g2500 694 MobiDBLite consensus disorder prediction 676 694 - -
Mibi02g2500 694 SMART rrm1_1 468 541 IPR000504 GO:0003723
Mibi02g2500 694 MobiDBLite consensus disorder prediction 652 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2500 Mibi-ChrMibi02 30960912 30962996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2500 396 543 Eukaryotic Initiation Factors Gene Family AT3G11400 32.278 1.64e-11 64.3