Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2470 ATGGATGTCGATGGGGGTAATAATAAGCGCGTATTTCAACGTCTCCGTGGGCCTCCTCCACCTTCTGATTCTAAGCAGCAGAAAGTTTGTTTTCATTGGCAAGCAGGAAGGTGTAACAGATATCCATGCCCGTTTCTACACAGTGAATTACCTCCTCCTCAAAATGCTAATGGGATGATGACGTCATCTTCGAAAAGGTCCCATCATGGGTCTTCTTCTGATGATTCTTCTTCAGGGTTCTCACGTCCACGGAGGAATCCGAATTTTAGTGGAGCATCAACGTGGGGTGGGGTTCATATTGGTGGGAATAGATTAGTTAGGAAGACTGAGAAGCTTTGTACTTATTGGGTTAATGGGAAATGTAGTTATGGAGAGGGTTGTAAGTACCTTCACTCTTGGAGTGTTGGGGATGGTTTTTCCTTACTAACTCAACTTGAAGGGCATCAGAAGGTTGTGACTGGAATATCTCTGCCTTCTGGCTCAGATAAGCTTTATACTGGAGGTAAAGATGAGACAGTGAGGCTTTGGGACTGCCAGTCTGGTCAGTGTTTGGCTGTGATAAGTCTTGGATGTGAAGTGGGTTGTATGATTGTTGAAGGTCCTTGGCTTTTTGTTGGTGTGCCCAATTTTGTGAAGGCATGGAACACTCAAACATCAAGTGAACTGAGTCTAAGCGGCCCTGCTGGACAAGTTTACGCTTTGGCCGTGGGCAACAGTATGCTTTTTGCTGGTACACAGGACGGGTCTATATTGGCATGGAAGTTTAATGCGGCTAGTAACACCTTTGAGCCTGTTACATCACTTACAGGCCATTCTGGTCCTGTTGTTTCATTCGTTGTTGGAGCAAATAGGCTATACTCAGGTTCAATGGATAAGACAATAAGAGTTTGGAATCTTGAGACTTTGCAGTGTTTACAGACGTTAACAGGGCATACATCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGGTTCATTAGATAAATCAGTAAAGGTGTGGGTAGCTACAGAAAGTGGAAACTTGGAAGTGACTTATACACACAATGAGGAAGATGGTGTGCTTAAACTGTGTGGGATGCACGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAACAATAATACTGTGCACCTCTATGATCTGCCATCCTTTGCAGAGAGAGGCAAGATTTTTTCAAAGCAAGAGGTTCGAGCTATTGAGGTTGGTCCAAGTGGCATATTCTTCACTGGTGATGGAGCAGGTCAAGTGAAAGTCTGGAATTGGTTGCCGGAGACAGCTTCTTCAAATCCAATAAATGGCGGCTCATAA 1323 0.4437 MDVDGGNNKRVFQRLRGPPPPSDSKQQKVCFHWQAGRCNRYPCPFLHSELPPPQNANGMMTSSSKRSHHGSSSDDSSSGFSRPRRNPNFSGASTWGGVHIGGNRLVRKTEKLCTYWVNGKCSYGEGCKYLHSWSVGDGFSLLTQLEGHQKVVTGISLPSGSDKLYTGGKDETVRLWDCQSGQCLAVISLGCEVGCMIVEGPWLFVGVPNFVKAWNTQTSSELSLSGPAGQVYALAVGNSMLFAGTQDGSILAWKFNAASNTFEPVTSLTGHSGPVVSFVVGANRLYSGSMDKTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSGSLDKSVKVWVATESGNLEVTYTHNEEDGVLKLCGMHDSQGKPILLCSCNNNTVHLYDLPSFAERGKIFSKQEVRAIEVGPSGIFFTGDGAGQVKVWNWLPETASSNPINGGS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2470 440 FunFam Zinc finger CCCH domain-containing protein 48 225 433 - -
Mibi02g2470 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 337 IPR001680 GO:0005515
Mibi02g2470 440 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Mibi02g2470 440 SMART c3hfinal6 109 133 IPR000571 GO:0046872
Mibi02g2470 440 SMART c3hfinal6 24 49 IPR000571 GO:0046872
Mibi02g2470 440 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Mibi02g2470 440 Gene3D - 132 200 IPR015943 GO:0005515
Mibi02g2470 440 MobiDBLite consensus disorder prediction 52 93 - -
Mibi02g2470 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Mibi02g2470 440 MobiDBLite consensus disorder prediction 1 27 - -
Mibi02g2470 440 MobiDBLite consensus disorder prediction 54 93 - -
Mibi02g2470 440 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Mibi02g2470 440 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515
Mibi02g2470 440 Pfam WD domain, G-beta repeat 141 177 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 261 298 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 388 425 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 301 338 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 217 254 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 138 177 IPR001680 GO:0005515
Mibi02g2470 440 SMART WD40_4 342 385 IPR001680 GO:0005515
Mibi02g2470 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Mibi02g2470 440 Gene3D - 206 435 IPR015943 GO:0005515
Mibi02g2470 440 Gene3D - 23 131 - -
Mibi02g2470 440 PANTHER - 18 431 IPR044715 -
Mibi02g2470 440 Pfam CCCH-type zinc finger 111 131 IPR041367 -
Mibi02g2470 440 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Mibi02g2470 440 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Mibi02g2470 440 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Mibi02g2470 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Mibi02g2470 440 SUPERFAMILY WD40 repeat-like 139 428 IPR036322 GO:0005515
Mibi02g2470 440 ProSiteProfiles Zinc finger C3H1-type profile. 24 50 IPR000571 GO:0046872
Mibi02g2470 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Mibi02g2470 440 SUPERFAMILY CCCH zinc finger 108 132 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2470 Mibi-ChrMibi02 30058013 30063093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2470 142 428 Miscellaneous Gene Families AT5G08390 24.662 8.54e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g2470 WD40 0.00014 CL0186