Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2443 ATGGGGAGAGGGAGAGTGGTTCTGGAGAGAATAGAGAACAAAATAAACAGGCAAGTAACGTTCTCAAAGAGAAGGAATGGATTGCTGAAGAAAGCGTACGAGCTTTCTGTGTTGTGTGATGCTGAAATTGCTCTTATCATCTTTTCAAGCCGTGGCAAACTTTTCCAGTACAGCAGCTCTGACCTAAATAGAACCATAGAGCGTTATCGTCAATCTTGCTACGTCTCACACGCTCACGAGCTTGTGGAACATGAATCTCAGAACTTGTACCAGGAGCTATTGAGATTAAAAGTCAAACATGAGTCTCTTGAGAGGACACAAAGGCATCTACTTGGAGAAGACCTTGAGCCACTAAACATGAAGGAATTGCATAACCTTGAGAAACAACTTGACAAAACCCTAACACAAGCACGACAGCGCAAGAGCCAGAAGATGATGGAACGAGTAGACGAGTTACGCAAAAAGGGACACGAGCTAGAGGAGGTTAACAAGCAACTCAAGTACAAGCTTCAAGAAATATATGAACGTAGCCAAACTGTAGAAGATGTTGAAGTCCAGTCAGCCACAAATCACAGCTCCTTACAAATATGGCATGGACAGAAGGAAGATAGCTCAAAAGGGAAAGCCATTGAGACCAGGACACAGGGTGGGCAGGTCATTCATAACAATAATAGCATCGACCACAACAATGGATGGCTCATTTAA 705 0.434 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLFQYSSSDLNRTIERYRQSCYVSHAHELVEHESQNLYQELLRLKVKHESLERTQRHLLGEDLEPLNMKELHNLEKQLDKTLTQARQRKSQKMMERVDELRKKGHELEEVNKQLKYKLQEIYERSQTVEDVEVQSATNHSSLQIWHGQKEDSSKGKAIETRTQGGQVIHNNNSIDHNNGWLI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2443 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 Coils Coil 86 106 - -
Mibi02g2443 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 MobiDBLite consensus disorder prediction 188 209 - -
Mibi02g2443 234 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi02g2443 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Mibi02g2443 234 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Mibi02g2443 234 Coils Coil 120 169 - -
Mibi02g2443 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Mibi02g2443 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi02g2443 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi02g2443 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi02g2443 234 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2443 Mibi-ChrMibi02 29401831 29414106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2443 1 190 MADS-box Gene Family AT2G45650 56.842 1.65e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi02g2443 K-box 3.5e-24 No_clan