Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2414 ATGCCTTCTCTTCCAATCTCTGATATTGCTCATTCTGAGATTCCCCAAGAGAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGAATCTTATTGAAGACGATGTTTCAGCGAAGAAGATGAAGAAGAAGGAGAGCAAGAAGCGTAAGGCTTTGGATGCTGAGATGATGATGTCGAGTGAGGATGAGGTAAAGAGTGAGACGAGTTCTGAGTTGGTTGAGCCTGATAGTGTGAAGGAGAAGAGGAAGAAGAAAAAGGCCAAGTTGGGTGAAACGGTAGATAAAGAAGAAGAGGTTGAGAAAGAAAACCCTAATGCGGTTTCAAACTTTAGGATTTCGGCGCCGTTGAGGGCTAAGTTGAAAGAGAAAGGGATTGAATCGTTGTTTCCTATTCAGGCCATGACTTTTGATACCATTCTTGATGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGAAAAACTCTTGCCTTTGTGTTACCAATATTAGAGTCTTTAACAAATGGTCCTGCAAAAGCGGCGAGAAAGCCTGGAGGTAGTAAGGCTCCGTGTGTTCTTGTGCTCTTACCTACTAGAGAATTGGCCAAACAGGTGGCTGCTGATTTCGAAGTTTATGGTGGGGCACTGGGATTGAAAACCTGCTGTTTGTATGGTGGAACTCAGTATTCAGCACAAGAATATAAACTGAAGAATGGTGTTGATGTTGTTGTTGGAACTCCAGGACGTATAAAAGATCATATAGAGAGGAACAATCTTAACCTGAGCCAACTAAAGTTCCGAGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTCGAAGATGTTGAACTCATTCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGCCTGGGTTAAGAGTATTTCTATGAAATTTCTAAAATCTGATAAAAAGACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTAAGGCATATTGTTCTCCCGTGTTCCAGTGCTGCTAGGTCCCAACTTATTCCAGATGTTATACGTTGCTATTGCAATGGAGGCCGAACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTAGCAGGGTTGTTACCTGGTGCACGAGCTCTACATGGTGATATACAGCAGTCGACACGTGAGGTTACCTTAAATGGTTTTAGGGCTGGGAAGTTTACCACATTAGTGGCCACTAATGTCGCAGCCCGTGGTTTGGACATCAATGATGTTCAGTTAATTATCCAGTGTGAACCGCCGCGTGATGTTGAAGACTATATCCACCGATCTGGGCGCACAGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAATATATCAAAAATAGAAAGAGAATCTGGCGTGAAATTTGAACACATTTCTGCTCCCCAGCCTGCTGATATTGCCCAAGCTGTTGGTGGCGATGCTGCTAAATTGATAACCCAAGTGTCTGATGATGTCATCCCTGCATTCACATCTGCTGCTGAGGATCTCTTAAACAAGTCAGGCTTAACAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGACTGTTGGTTATACGGAGATAAAGAAAAGATCACTACTTAACTCCATGGAGAACCATGTTACAGTACTTTTGGAGACTGGAAGACCTATCCACTCCCCTTCATACGTATTTGGAACCTTGAGGAGATTCTTGCCTCAGGAGAAGGTTGACTCAGTGAAGGGTCTTACTATCACTGCTGATGGAAATGGTGCTGTATTTGATGTGCCAGCTGAAGACTTAGATATCTTTCTGACGGGTCAGGAAAATGCAGCGAATGTAAGTATAGAAGTATTGAAAGCATTGCCAAGTTTGCAAGAAAGAGAACAATCAAGAGGTAGATTTGGAGGTGGTCGTGGCGGCGGCGGCGGTAACAGGTTTTCCGGTGGAAGGGGTGGTGGCAGATTTTCAAATGATAGAAATGGTCGGTTTTCCAATAATTCTAGAGGTGGGAGAGGTCGCGGCAACTTTGGGGCTAAGAGGTGGTGA 2070 0.4406 MPSLPISDIAHSEIPQEKKEKKKKMKNENLIEDDVSAKKMKKKESKKRKALDAEMMMSSEDEVKSETSSELVEPDSVKEKRKKKKAKLGETVDKEEEVEKENPNAVSNFRISAPLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKPGGSKAPCVLVLLPTRELAKQVAADFEVYGGALGLKTCCLYGGTQYSAQEYKLKNGVDVVVGTPGRIKDHIERNNLNLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPAWVKSISMKFLKSDKKTADLVGNEKMKASTNVRHIVLPCSSAARSQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSTREVTLNGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAQAVGGDAAKLITQVSDDVIPAFTSAAEDLLNKSGLTAVELLAKALAKTVGYTEIKKRSLLNSMENHVTVLLETGRPIHSPSYVFGTLRRFLPQEKVDSVKGLTITADGNGAVFDVPAEDLDIFLTGQENAANVSIEVLKALPSLQEREQSRGRFGGGRGGGGGNRFSGGRGGGRFSNDRNGRFSNNSRGGRGRGNFGAKRW 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2414 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 317 IPR014001 -
Mibi02g2414 689 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Mibi02g2414 689 MobiDBLite consensus disorder prediction 634 689 - -
Mibi02g2414 689 MobiDBLite consensus disorder prediction 47 102 - -
Mibi02g2414 689 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 72 488 - -
Mibi02g2414 689 Pfam DEAD/DEAH box helicase 128 305 IPR011545 GO:0003676|GO:0005524
Mibi02g2414 689 Gene3D - 51 316 IPR027417 -
Mibi02g2414 689 CDD SF2_C_DEAD 332 458 - -
Mibi02g2414 689 MobiDBLite consensus disorder prediction 12 40 - -
Mibi02g2414 689 SUPERFAMILY RNA-binding domain, RBD 542 625 IPR035979 GO:0003676
Mibi02g2414 689 SMART helicmild6 372 449 IPR001650 -
Mibi02g2414 689 Pfam GUCT (NUC152) domain 538 633 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mibi02g2414 689 SMART ultradead3 123 335 IPR014001 -
Mibi02g2414 689 CDD DEADc 115 312 - -
Mibi02g2414 689 Gene3D - 317 477 IPR027417 -
Mibi02g2414 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 488 IPR001650 -
Mibi02g2414 689 FunFam DEAD-box ATP-dependent RNA helicase 7 555 627 - -
Mibi02g2414 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 461 IPR027417 -
Mibi02g2414 689 CDD GUCT_RH7_like 545 630 - -
Mibi02g2414 689 MobiDBLite consensus disorder prediction 1 102 - -
Mibi02g2414 689 Pfam Helicase conserved C-terminal domain 357 449 IPR001650 -
Mibi02g2414 689 Gene3D - 552 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2414 Mibi-ChrMibi02 28619752 28624319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2414 141 488 Eukaryotic Initiation Factors Gene Family AT1G72730 32.011 3.74e-44 162