Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2373 ATGATCAATCCAACGACTCACATCCTCCTTCCTCCTCCATTTTCTCTCACCTCAACCTCATCCCCACAATCTCTCCCCTCTGAAACCTCCCCGATCATTTCCGTTACACGCGCGGGAGATTCAGATCCACGCGCCTCAATAATGGTGATCTGTGGTGGTGGGAAGCCACTGAAGCGAATGAAGAGGAGAGTAACCGCCGATTTCTACGACTTCCTGACGTTTCCGTCTCCTTCGATGGCCGGAGAAGAAGGTCTCTCCGGTGGGCCCTTCCGTACGAACGTCAGATCATTCCTATCGAAGCACGCGCTCCTCCCTCCGCCTTCCGCCCTTTTCCCCCACCTGATGACGTGGCAGATCTTGTTCCGTGTCGTCGGCGGCGATCTCACCGACGGCCCTGATTCTTCCCCCGCCGTCGTCTGCCTCGATGTTATCGAAGAAGACGTCGCCAGATCCAGATCCCTTTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGGCATCCAGTGTGCGGAAAACGGTACCATTTTATAATCAAGGCTGATGGTACTTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATCTTGCACTTGTCAGAATCCAAGTGCAAGTCGTGCAACCATGTTACGACCACGGATGATGTTGAAGACTGGGTCTATCACCAGTTAGAAAGCACAACTCATCTCTTACATGGTGTAGTCCATGCTAATGGATATGGTCACCTTCTTCGAGTTAATGGTAGAGAAGGTGGCTCAAAGTTTCTCTCTGGGCACCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTGAGCGTGATGGATGTGTCAAAGAAGTATGGGTTGGAATACCGGCTGCTCCATGCTATTACAAAAGGACATCCTTGGTATGGTGATTGGGGTTATCAATTTGGTTCTGGTAGCTATGGTCTGACGCACGAATCATACAAGGCTGCTGTTGAATTCCTGTCCAACCTGCCCTTGTCCACCTTTCATTCCCCGGGGCAGAAATGTGATTCTCGTGTACAAGATATGATCTCATATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGATTTCTTTTGTGTTTTAATGGGTTTGATTCATGATGCTCGTAAGACTGCTACATCAAAGAACATTGAAGACAGCACCTGCAAGAAGCGACGTCTGAATGCTACAGGGGTGTCATCTTCATGGACTAAGAGTGACATTGAATGTGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTAAGGGGTGCTGTCTGTAAGGTGGCCTCTCCAGAACTGCTTGATTATTGCCTTGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCAATGGTGAATACCCGATGCAATCCTGTGACTGGTGCTTTTGAGTACAGACTAGAGACCGGGAACAGTTCTCGCAATGAAATTGCCAGCAACATTTCTTCAGGCCTGAATCATCCATCTGAAGGGACTCTTCTTCATGACTTGAGATACATGTACAATTCTATTCTTCACCCTCAGATGATGTTGAGTTATGATCCAGGGGAGACAAGGGCACTTGCCATGAGCTCTGCTCAGAAACTTATTGACTGCAAGAAGTTTGTAAAGGACTTTAACCCCGAGACATTGCCCCTGACAAACCCATCTAAGATACGGCTCTCATGTCAAATTGAACTAGAAGACGAATCTGAAGATTTTGCCACACACCTTCCATCAGAATTAGTTATCCTCCCTGTAAATGCCACTGTAGCTGACCTGAAGATTGAAGCTGCAAATGCCTTTCAAGATGTATATGTCATGTTCAGAAGACTTCAAATTGATGAGCTCCTTGGCTATAATGTCGATGATTCCTCCCAGATCAACCACTTGTCCAGATCTATGATCAACCCAGTCCGGCTGCGAGGAAAATGCATCGGCAAGAATGGGCTGAGCAAGTTCCAAATGGAACGGGGCACCGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCAAAGGACGATGATGGAGAGAGAATGTTGGCTTGTGACATTTGTGGAGTGTGGAGACACACAAGGTGTTCTGATATTCATGATGCAGATCCTGTGCCTGCACGGTTTGTTTGTCCAAGATGTCAAAAATGTGACCCCAAACACAAATCTAATGGGCCCTGCGAGGATGAGATTGTGAATGGTATTACCACTAACAAGAAATGCTTTGAAAACTGCTTGCTGGTACCATCTGATGTTCGTTGA 2286 0.4794 MINPTTHILLPPPFSLTSTSSPQSLPSETSPIISVTRAGDSDPRASIMVICGGGKPLKRMKRRVTADFYDFLTFPSPSMAGEEGLSGGPFRTNVRSFLSKHALLPPPSALFPHLMTWQILFRVVGGDLTDGPDSSPAVVCLDVIEEDVARSRSLYCDQCRVVGWSGHPVCGKRYHFIIKADGTSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGHHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGDWGYQFGSGSYGLTHESYKAAVEFLSNLPLSTFHSPGQKCDSRVQDMISYYQSLSKNELVNIRDFFCVLMGLIHDARKTATSKNIEDSTCKKRRLNATGVSSSWTKSDIECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGAMVNTRCNPVTGAFEYRLETGNSSRNEIASNISSGLNHPSEGTLLHDLRYMYNSILHPQMMLSYDPGETRALAMSSAQKLIDCKKFVKDFNPETLPLTNPSKIRLSCQIELEDESEDFATHLPSELVILPVNATVADLKIEAANAFQDVYVMFRRLQIDELLGYNVDDSSQINHLSRSMINPVRLRGKCIGKNGLSKFQMERGTERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDADPVPARFVCPRCQKCDPKHKSNGPCEDEIVNGITTNKKCFENCLLVPSDVR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2373 761 Pfam PHD-finger 678 725 IPR019787 -
Mibi02g2373 761 SUPERFAMILY FYVE/PHD zinc finger 667 723 IPR011011 -
Mibi02g2373 761 ProSitePatterns Uncharacterized protein family UPF0054 signature. 234 244 IPR020549 -
Mibi02g2373 761 CDD PHD_MMD1_like 677 722 - -
Mibi02g2373 761 SMART PHD_3 677 723 IPR001965 -
Mibi02g2373 761 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 61 733 - -
Mibi02g2373 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 728 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2373 Mibi-ChrMibi02 27530831 27538470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2373 133 724 PHD Transcription Factor Family AT5G22260 29.006 9.43e-89 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi02g2373 PHD 2.5e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g2373 02 27530831 27538470 Mibi02g2373 02 27530831 27538470 ECH