LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g2334	ATGGATTCGAAGACACTGGAAGAAGCGGGACAAAGCGCTTTGAATTTTAAGTGTGTGAAGATTCTTCACGGAGCTGACAGATCTATCGCTTGCCAGACTCCAGAGAAGACTAGTGAGCCCTTACTTAATAAAGCCAAGGAGGGATCCACCCAGCTTCCTGAAACATACAAGGCTTTAGCAGATTTATTTGATCATATGAGTTGTTCACTGAGGTTGCTTCGTCTTTGTAAAAAATCTACCACCTTTCAAAACATTTGTTCCCAGGTTGAAGTTCTAGCTAAGAGAAAATTCTTGTACACGGATCTTGCACAGATAAAGTATATACTTCCTGAAGCCATACACATAGAGAAGGTGTTAGTAAATGACAATAGAAGCTTGTGTATGAAGCCTGATTTGAAGATCACCTTGGTATATGAGGTTGTGCTTGGACACTCTTGTGAAAGTACTTATGTGGCACTCCGGAAGCTTTTTGGTTCCAGGCTACTTGAGTTCTTCAATACGCATCCAGAGAATACTGATATTCCAGAAGCTACACTACCAGAGCCTTTTCAAACAGCTGATAGCTTGATTTATGAGGATTTGCCTGTAGATCCTTCAACAATACTCTCACCATCAACTGATCAAAATCAACATCTATCACAGGAATGCCAGCGTTATCCTCTTAGAAGGCATTTCTCAAGGAAGAATGTTGTGGCAGAGAGAGAAAATAATGCCGTAGTAAGTCAAATTTCTCAGTCACATCATCCATCTGATTGCTTAGATAGTGGAGGAGGTGAAGGTGATAGTGACAGTGATTGCTTAGATAATGAAGGAGGTGAAGGTGACAGTGACTGTGATTGTGTAGATAATAAAGGAGGTGAAGGTGACAGTGAATGTCAGAAAAAATGTACTACTACATATTTGAAATCTGATCTGGATATGGAAAAAGAACAGAAGAATGAATCATGTTCCATGGGATCACAATGCAGTGTTGTTAATACACCAATACGTCTGATTTGCTCTCCACAGTCTGTTCGTTGTGGTAGTTATGAAAACTCTTATCTCAAGATTGCCCCATCCACGGATGTATTAATGGCAGAGACACCTGCTCAGTCAACACCTAGAAGATCGGCGCCCAATTCTAATGTTAATCTTAAGCATATGACCGCCCAAAATTCAACTTCAAGCAATAAGCAAGTAAAAAGGGTTCTTTTTTCACATGAAGGGGATTATGATGTTGACAAGTTAGAATCAAGTAGAGATGCTTGTGATAACATCCCTGAAGTTAGTCAAGCATGCACTGAGGATTCTAATTCTATTTTATCCCAGAAGGTGGCTAAGTGCATTGATTGTTCTCGTGAGAATACGAATCAGATACAAGGTGGTTCAACAACCTGGCAGCAGAAGCCTTCATCGTTGCTTGGCCTTGAGAAGCTGAAGAGCAGATTAATTTCCTTGAAAATGCAGCGCCAGGTTGGATCTACACGAAGTCGGGCCCTGGTGAAGGCACTATGTACTGGTGAGTGTCTCAATTTGCGTCTTTCAACTATGGAAGCTGAGTGGATTAGATCATTGTCAGATGCCTAA	1566	0.41	MDSKTLEEAGQSALNFKCVKILHGADRSIACQTPEKTSEPLLNKAKEGSTQLPETYKALADLFDHMSCSLRLLRLCKKSTTFQNICSQVEVLAKRKFLYTDLAQIKYILPEAIHIEKVLVNDNRSLCMKPDLKITLVYEVVLGHSCESTYVALRKLFGSRLLEFFNTHPENTDIPEATLPEPFQTADSLIYEDLPVDPSTILSPSTDQNQHLSQECQRYPLRRHFSRKNVVAERENNAVVSQISQSHHPSDCLDSGGGEGDSDSDCLDNEGGEGDSDCDCVDNKGGEGDSECQKKCTTTYLKSDLDMEKEQKNESCSMGSQCSVVNTPIRLICSPQSVRCGSYENSYLKIAPSTDVLMAETPAQSTPRRSAPNSNVNLKHMTAQNSTSSNKQVKRVLFSHEGDYDVDKLESSRDACDNIPEVSQACTEDSNSILSQKVAKCIDCSRENTNQIQGGSTTWQQKPSSLLGLEKLKSRLISLKMQRQVGSTRSRALVKALCTGECLNLRLSTMEAEWIRSLSDA	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g2334	521	CDD	Cdt1_m	34	182	IPR014939	-
	Mibi02g2334	521	Pfam	DNA replication factor CDT1 like	52	117	IPR014939	-
	Mibi02g2334	521	MobiDBLite	consensus disorder prediction	240	270	-	-
	Mibi02g2334	521	SMART	CDT1_2	52	181	IPR014939	-
	Mibi02g2334	521	PANTHER	DNA REPLICATION FACTOR CDT1	41	447	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Mibi02g2334	521	SUPERFAMILY	"Winged helix" DNA-binding domain	49	183	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g2334	Mibi-ChrMibi02	26966309	26970192	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g2334	47	185	Core DNA Replication Machinery Family	AT3G54710	40.426	1.13e-27	114