Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2320 ATGAGTCACACTCCGATCCGTAGCCGGAATGGAGCGAAACTGGGCTTGAAGGTAGAATCCATTCGGCAATTGGGATTGATCGGTGGGGAATCGTACCCTCAACGACCTGATGAGGCTGATTGTATCCGTTATTTGCAGACAGGGTTTTGTCGGTATGGTTCTAGGTGTCGGTTCAATCATCCCCGTGACCGTGGCGTGGTAAGTTTTGCTGTGGTTGATTACTGGATGGTTTTGGATGGTTTTGTTGTCAATTCAAGAGAGCACATCACGGTTAAGCACGGAGCAATGGATAAGCATGTAGCCAGATTCTGTAATGACATGAGAATACTGCAGGCTTGGAAGTTGGCTTTGTCTGAAGCATACTACATCGATGGTTTAGTGATAAATGATAGGAACGAAAGTGAGGAGATACGGCGCATTGTTAAACTTTGTCATATGCTGCCAAGTCGCATCCCTTCTGCACAAATCTGA 471 0.4628 MSHTPIRSRNGAKLGLKVESIRQLGLIGGESYPQRPDEADCIRYLQTGFCRYGSRCRFNHPRDRGVVSFAVVDYWMVLDGFVVNSREHITVKHGAMDKHVARFCNDMRILQAWKLALSEAYYIDGLVINDRNESEEIRRIVKLCHMLPSRIPSAQI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2320 156 Gene3D - 30 107 - -
Mibi02g2320 156 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 37 62 IPR000571 GO:0046872
Mibi02g2320 156 PANTHER PROTEIN PHOSPHATASE RELATED 30 65 - -
Mibi02g2320 156 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Mibi02g2320 156 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Mibi02g2320 156 SUPERFAMILY CCCH zinc finger 37 63 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2320 Mibi-ChrMibi02 26710766 26713486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2320 30 67 C2H2 Transcription Factor Family AT5G18550 71.053 1.60e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g2320 zf-CCCH 1.2e-10 CL0537