Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2271 ATGGAGTACGGGAGTGGAGGCGGTGGTGGGTCCCCCGGGGACCACCACCATCAGCACCACCTTCTCGACGGTTCTGATTCTCAGAGGAACAAGAAGAGATACCACCGTCACACTGCAAATCAGATTCAGAGGCTTGAATCAATGTTCAAGGAATGCCCCCACCCAGATGAAAAGCAGAGATTACAGTTGAGCAGAGAACTAGGCTTGGCCCCTAGGCAGATCAAGTTTTGGTTTCAAAACAGGAGGACTCAGATGAAGGCCCAGCACGAGAGAGCAGATAATTGTGCCCTCAGAGCAGAGAACGACAAGATTCGATGCGAGAACATTGCCATCAGAGAGGCCCTCAAAAACATCATTTGCCCTTCTTGTGGTGGCCCTCCTCTTCACGAGGATTCCTACTTCGACGACCAGAAATTACGCCTAGAGAATGCTCAATTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCTAAATACATAGGAAGGCCAATTTCTCAACTCCCACCAGTTCAGCCTATTCACATTTCATCTCTTGACTTGTCAATGTCCAGTTTTGGGAGCCAATCTTTGATGATTGGTGGTGGTGGTGTTGGTCCTTCTCTTGATCTTGACCTTCTTCCTGGGAGTTCTTCTTCCTCGGGGCCTAATTTGCCGTATCAGGCGGCGGCGGCGGCTGCTTTCTCCGACGTGGATAAGTCCCTTATGTCGGACATTGCAGGACATGCCATGGATGAGTTGCTTAGGCTTTTGCAGTCTAATGACCCCTTTTGGATAAAGTCAAGTACTGATGGTAGAGAAGTTCTTAATCTTGATGCCTACGGAAACATGTTTCCCAGATCGAATAGTCATGTCAAGAACCCCAATATTCGGATTGAAGCTTCTAGAGATTCTGGGGTTGTCATTATGAATAGCTTGGCTTTGGTTGACATGTTCATGGATGCTAACAAGTGGATGGAGCTATTTCCGACAATAGTTTCAATGGCAAACACTATTAAAGTGATATCTTCTGGGATGCTTGGTGGACATAGTGGGGCTTTACAATTGATGTACGGAGAGCTTGCATTGCTTTCTCCATTGGTTCCAACCAGAGAGTTCTATTTCCTGCGATATTGTCAGCAAATAGAGCAAGGCTCATGGGCAATTGTGGATGTTTCTTATGATTTCCCTCAAGATCATCAATTTGCTCCTCAGTTTCGATCTCATCGTTTCCCTTCTGGTTGCTTGATCCAGGACATGCCTAATGGGTATTCTAAGGTGACTTGGGTTGAACATGTGGAGATTGAAGATAAAGCACCAATTCATCGTCTTTACAGAAACCTCATTTACAGTGGCTTAGCTTTTGGAGCAGAAAGGTGGCTCGCCACACTTCAAAGAATGTGTGAAAGATTCGCTTGTTTAATGGTCACTAGCAATTCAACTCGTGATCTTGGAGGGGTGATTCCATCACCGGAAGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTGACCAATTTCTGCACAAGCATTAGTGCATCTAATGGCCATAGATTTACCACACTTTCCGGGTTTAACGAGCTCGGCATTCGAGTCACCGTCCATAAAAGCACCGATCCTGGCCAGCCAAACGGCATCGTGCTGAGCGCAGCCACCACCATCTGGCTCCCCATCCCTCCCCAAACCGTCTTCAACTTCTTCAAGGATGAAAGAAAAAGATCTCAGTGGGATGTTCTTTCGAATGGGAATGCTGTGCAAGAGGTTGCTCATATAGCCAATGGGTCTCACCCTGGGAACTGCATATCTGTTCTTCGAGCCTTCAACACAAGTCAGAACAACATGCTGATACTACAAGAGAGCTGTGTGGACTCATCAGGATCACTTGTGGTGTACTGTCCGGTGGATCTTCCGTCCATAAACATCGCCATGAGCGGTGAGGATCCGTCGTACATCCCACTGCTTCCGTCCGGGTTCACGGTGATGCCGGACGGGCAGGTGGACCTAGCCGGAGGTGGAGACGGAGCATCCAGCAGCACAAGCAGTGGAAGGAGGCCAGGTGGGTCTCTGATCACAGTGGGGTTTCAGATTTTAGTGAGCAGCTTGCCATCTGCTAAGCTCAACATGGAGTCAGTGACTACCGTTAATAACCTCATTGGCACCACTGTGCAACAAATTAAGGCTGCTTTGAATTGTCCTACTTCCTCCTGA 2190 0.4776 MEYGSGGGGGSPGDHHHQHHLLDGSDSQRNKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNIICPSCGGPPLHEDSYFDDQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMSSFGSQSLMIGGGGVGPSLDLDLLPGSSSSSGPNLPYQAAAAAAFSDVDKSLMSDIAGHAMDELLRLLQSNDPFWIKSSTDGREVLNLDAYGNMFPRSNSHVKNPNIRIEASRDSGVVIMNSLALVDMFMDANKWMELFPTIVSMANTIKVISSGMLGGHSGALQLMYGELALLSPLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPQDHQFAPQFRSHRFPSGCLIQDMPNGYSKVTWVEHVEIEDKAPIHRLYRNLIYSGLAFGAERWLATLQRMCERFACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCTSISASNGHRFTTLSGFNELGIRVTVHKSTDPGQPNGIVLSAATTIWLPIPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPSINIAMSGEDPSYIPLLPSGFTVMPDGQVDLAGGGDGASSSTSSGRRPGGSLITVGFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPTSS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2271 729 SMART START_1 238 463 IPR002913 GO:0008289
Mibi02g2271 729 Pfam Homeodomain 31 86 IPR001356 GO:0003677
Mibi02g2271 729 Pfam START domain 239 463 IPR002913 GO:0008289
Mibi02g2271 729 MobiDBLite consensus disorder prediction 13 30 - -
Mibi02g2271 729 Gene3D - 237 463 IPR023393 -
Mibi02g2271 729 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Mibi02g2271 729 Gene3D - 16 102 - -
Mibi02g2271 729 SUPERFAMILY Homeodomain-like 11 88 IPR009057 -
Mibi02g2271 729 SMART HOX_1 30 92 IPR001356 GO:0003677
Mibi02g2271 729 CDD homeodomain 31 89 IPR001356 GO:0003677
Mibi02g2271 729 FunFam Homeobox-leucine zipper protein GLABRA 2 238 462 - -
Mibi02g2271 729 SUPERFAMILY Bet v1-like 231 464 - -
Mibi02g2271 729 FunFam Homeobox-leucine zipper protein HDG1 18 104 - -
Mibi02g2271 729 CDD START_ArGLABRA2_like 233 462 - -
Mibi02g2271 729 SUPERFAMILY Bet v1-like 484 720 - -
Mibi02g2271 729 ProSiteProfiles START domain profile. 229 466 IPR002913 GO:0008289
Mibi02g2271 729 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Mibi02g2271 729 MobiDBLite consensus disorder prediction 1 38 - -
Mibi02g2271 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 724 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2271 Mibi-ChrMibi02 25829859 25833662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2271 26 729 Homeobox Transcription Factor Family AT1G73360 68.272 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi02g2271 START 1.7e-50 CL0209