Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2241 ATGTCATCTTCCTCACTCCCAACCTCCCAACAGTTAATCTCCGCCGCAGCAGATAATAATAATGCCTCCGCCACCACCAACAAACGAAAGAGAAGACCCGCCGGAACACCAGATCCGGACGCCGAGGTGGTGTCCCTGTCGCCGAAGACTCTATTAGAATCGGACCGATACGTGTGTGAGATCTGCAACCAGGGGTTTCAGAGGGATCAGAACCTGCAGATGCACAGGAGGAGGCATAAGGTGCCATGGAAATTGTTGAAGAGGGAGACACCCGTGGTGAGGAAGAGGGTTTTTGTGTGTCCTGAGCCCAGCTGTTTGCACCATGACCCGTGTCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACATTTCCGGCGTAAACATAGCAACCATAAGCAATGGGTCTGCCACCGTTGCTCCAAGGCTTACGCCGTCCAGTCTGATTATAAGGCCCATCTTAAAACCTGTGGTACCCGCGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCCAGGGTGGAGAGCTTCATAGAACACCAAGATGCGTGCAACATGGGCCGCCTCCGGTCCACAACGACGGAGTCGCAGCAACAGCAGCAGCAGCCGGCGTGCCTATCTCGAACCGCGTCAAGCCCGAGCCCGTCAAGCGAGACCAATTTCAGCGCCGGCCCGGCCTGGCCTCCGCCCGGTCTCGTCATACCTAAAACGACGACCGCAACAACAACAACAACAACAGAGCCTACATTCTTATACAAAAACAACAAAACCAACAACAATAACAACAACCAACACAAGCTCCACCCCAACTTGGACCTCCAGCTATCAACCGCCAGGGACGACATGCATTCGACACAATTACAGCTCTCGATCGGGTCGTCGACGGATTTGAGCGACAAGAATGAATCAAACAGGAACAACTCATCGCCAAAGGAGAGCAGTAACAGCAGCGATAAGCCGGAGGCGGCGGTGATGGTGGAGAAGGCGTATGCGGAGGAGGCGAGGAAGGAGGCGAAGAGGCAGATGGAGGCGGCGGAGAAGGAGTTCGCGAATGCCCGGAGAATAAGGCAGCAAGCTCAGGCGGAATTGGATAAGGCTTATGCTTTGAAAGAGCAAGCCATTAAGCAGATTAATTCAACCATGCTTCAGATCACATGCCATGCTTGTAAGCAACAGTTTCAGCAGCAAGCTCATAAGTTAATAACTGAAGCTGGTGGCCATGTTGTGTTAGAGAATAATAATAGCGGCAAAGATCATCATCAACATCACTAA 1266 0.5284 MSSSSLPTSQQLISAAADNNNASATTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSTTTESQQQQQQPACLSRTASSPSPSSETNFSAGPAWPPPGLVIPKTTTATTTTTTEPTFLYKNNKTNNNNNNQHKLHPNLDLQLSTARDDMHSTQLQLSIGSSTDLSDKNESNRNNSSPKESSNSSDKPEAAVMVEKAYAEEARKEAKRQMEAAEKEFANARRIRQQAQAELDKAYALKEQAIKQINSTMLQITCHACKQQFQQQAHKLITEAGGHVVLENNNSGKDHHQHH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2241 421 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 1 30 - -
Mibi02g2241 421 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Mibi02g2241 421 Coils Coil 326 374 - -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 188 221 - -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 188 266 - -
Mibi02g2241 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 289 318 - -
Mibi02g2241 421 Gene3D Classic Zinc Finger 45 130 - -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 1 43 - -
Mibi02g2241 421 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Mibi02g2241 421 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 388 IPR031140 -
Mibi02g2241 421 SMART c2h2final6 134 161 IPR013087 -
Mibi02g2241 421 SMART c2h2final6 98 128 IPR013087 -
Mibi02g2241 421 SMART c2h2final6 57 79 IPR013087 -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 233 266 - -
Mibi02g2241 421 MobiDBLite consensus disorder prediction 289 320 - -
Mibi02g2241 421 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2241 Mibi-ChrMibi02 25431538 25433784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2241 25 395 C2H2 Transcription Factor Family AT2G01940 59.008 4.10e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g2241 zf-C2H2 0.0039 CL0361