Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2217 ATGACCACGCACACGTTGAAAGTGCTTGGAATAGAATCGGGTGTAATTTCTACTATTTTGGGGGGTTTGGTCTGTGATTCAACTCTTAGTTCAGTGTCGTCGGAGACGAGCTTTGTGTGTGAAACTTCACATACAATGAGCTTGCAAATCCGACAAGAAAGAAGGGATCGGTCCAGGGTTCCTGCCCAAAGCTCTCGTCAGGAATGGGTTCCTAGAGCTCCTGCCGCCACATCCACCATTAATCCCGCCCCATCAAATCATCCATTGGACCAACATGGTGATGCTGGTTGCTCAAATAATAATGTTGCTCCACCGGAAAATAGGCATAGAAGCAGTCATGTGTCAAGGGGTCACATAAGTCGGCCTATGAATTTCAGAAGGGAAAGGGAGAAGGGAAGGAATGAGAATCATGTGGTGCAAGGAGCAAGGGACTCTGATTTGCCTCAATTGTTGCAAGAGATCCAGGATAAACTTACGAGAGGTACTGTGGAATGCATGATTTGCTATGACATGGTCCGTAGAACTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCATCTGAATTGCATCAAAAAGTGGGCTCGAGCACCTTCTTCTGTTGATGTGTCCGCGGAAAAGAACCAAGGATTTAATTGGCGGTGTCCTGGTTGTCAATCTGTACAGCTGACGTCATCAAAGGAGATTAGGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCGGACCTGTATCTTACACCACATTCTTGTGGAGAACCATGCGGGAAGCCTCTTGAGAGAGAGGTGTTGGTTGATGGAGGGAGAGTTAGCAAGGACGATCTTTGCCCTCATGTTTGTGTTTTGCAGTGCCATCCAGGTCCATGCCCTCCATGTAAAGCATTTGCACCGCCACGTTTGTGTCCTTGTGGGAAGAAAACCATTACCACACGGTGCTCTGATAGGTCCTCTGTTCTTACCTGTGGCCAACACTGTGATAAGCTTCTTGAGTGTGGGCGTCATAGGTGTGGACGTATTTGCCATGTGGGTCCATGTGACCCATGTCAGGTTCTAATCAATGCCTCTTGTTTTTGCAACAAGAAGATGGAGGTTATTCTTTGTGGGGATATGGCTGTGAAGGGTGAAATTAAAGCTGAAGGTGGCGTATTTCCTTGTGGTTCCAAGTGTGGGAAGAAGCTTAGTTGTGGTAATCATGTCTGCGATGAGATTTGTCATCCAGGAAACTGTGGGGAGTGTGAATTCTTACCAAGCCATATTAAGACATGCTGTTGTGGGAAAACAAAATTGGAGGAGGAACGGCAGAGTTGTCTAGATCCAATACCAACATGCTCACAAGTGTGTGACAAGCTTCTCCCTTGTGGGTTGCATCATTGTAGAGAGGCATGTCATTCTGGGGATTGTTCACCATGTTCGGTTCTAGTCTCCCAAAAGTGTCGGTGTGGTTCAACTTCTCGAACTGCGGAGTGCTATAGAGCTATGAAGGAGTCGTATACTTGTGAAAGATCTTGTGGGCGGAAAAAAAACTGTGGAAGACATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATCGCCTAAACGGGGAGTGGGATCCTCACTTCTGTACCATGCCATGTGGGAAGAAGCTACAGTGCGGGCAACATGCTTGTGAATCGCTATGTCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATCTTTACTGATTTGACATGTGCCTGTGGTAGGACCTCAATCCCTCCTCCATTGCCTTGTGGCACACCCCCTCCCTCATGTCAACTTCCATGTTCAGTTCCTCAACCTTGCGGTCATTCAGCCTCTCACAGCTGCCACTTTGGAGATTGCCCACCTTGTTCGGTGCCTGTGGCAAAGGAATGCATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGATCAAAGGATATTAGATGTAATAAACTCTGTGGGAAGACCAGACGGTGTGGTTTACATGCTTGTGGTAGAATATGTCACCCTTCACCTTGTGATATTCCATCTGGAAGTGACCAAGGGCTCCGGTCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTACAGCTGCATGTCACCCTTCAGCACCATGCCCTGATATAAGATGTGAGTTCCCTGTTACAATTACTTGTTCTTGCGGCCGTATAACAGCCAATGTTCCTTGTGGTGCTGGTGGCGGTTGTGGTAATTATAATGCAGATTCCATTCATGAAGCTTCCATAATTCAAAAGTTGCCCGTGCCACTTCAACCAGTGGAAAATAGCAAACTGATTCCCCTTGGACAGAGAAAGCTGGCATGTGATGATGAATGTGCTAAGTTGGAGCGTAAGAAGGTTCTTGCTGATGCTTTTGATGTCACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTACTACTACTGAATTGCTTGGAGACATGCTCAGGCGTGATCCCAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGCAGAGGAGTTATACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGACGAAGGATAAGAGAGATGCAGTGAGGTTTATTGCTGAGAGATGGAAGTTGGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGTTTTGTTGTTATTCATGTTACCCAGAAGTCAAAGGCTCCTCCCCGGGTGCTTGGGGTTAAGGGTACTACAACGGCAAATGCATCCTTGCCTCCACAATTTGATCCGTTAGTAGATATGGATCCCCGTCTTGTTGTCTCCTTTCCAGACTTACCAAGAGAAGCCGATATAAGTGCTTTAGTACTGAGGTTTGGTGGTGAGTGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAGCCGAGCTGCAACTGCCATGAGGAGGTTGGATCACGGAACAGCTTATCATGGGGCTGTGGTGTTCACACCAAATGCCGGGGCATCAGCAACGTCGGTAGCTACTAATGCATGGGGAGGAGCTGGGACGGTGAAAGAAGGAGGAGCACTGGCTGCATTGAAGGGGAATCCATGGAAGAAGGCTGTGGTTCAGGAGTCTGGCTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGACTACTGGTTCTGCTAATCTCCAGCCTTCTGCCTGGACGAGAGAAACACCTAAAGTCCCAATCGCTGTTTCATTGAACCGGTGGAGTGTCTTAGACCAGGAATCATCAGCCGCCGCAACCGCAAGAACTGAAGTTTCCCGGAAACACTCAGCAAGTTCATCTTCTGTCCCAAAGCTGGAATCTGGATCCAGTGGTTCTGTTCCAGGGCAGCATCAAGGAAATGCTAATTTTACAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3435 0.4702 MTTHTLKVLGIESGVISTILGGLVCDSTLSSVSSETSFVCETSHTMSLQIRQERRDRSRVPAQSSRQEWVPRAPAATSTINPAPSNHPLDQHGDAGCSNNNVAPPENRHRSSHVSRGHISRPMNFRREREKGRNENHVVQGARDSDLPQLLQEIQDKLTRGTVECMICYDMVRRTAPIWSCSSCYSIFHLNCIKKWARAPSSVDVSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEREVLVDGGRVSKDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSVLTCGQHCDKLLECGRHRCGRICHVGPCDPCQVLINASCFCNKKMEVILCGDMAVKGEIKAEGGVFPCGSKCGKKLSCGNHVCDEICHPGNCGECEFLPSHIKTCCCGKTKLEEERQSCLDPIPTCSQVCDKLLPCGLHHCREACHSGDCSPCSVLVSQKCRCGSTSRTAECYRAMKESYTCERSCGRKKNCGRHRCSERCCPLSNPNNRLNGEWDPHFCTMPCGKKLQCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRICHPSPCDIPSGSDQGLRSSCGQTCGAPRRDCRHTCTAACHPSAPCPDIRCEFPVTITCSCGRITANVPCGAGGGCGNYNADSIHEASIIQKLPVPLQPVENSKLIPLGQRKLACDDECAKLERKKVLADAFDVTTPNLDSLHFGENSTTTELLGDMLRRDPKWVLSVEERCKFLVLGKSRGVIHGLKVHVFCPMTKDKRDAVRFIAERWKLAVNAAGWEPKRFVVIHVTQKSKAPPRVLGVKGTTTANASLPPQFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDHGTAYHGAVVFTPNAGASATSVATNAWGGAGTVKEGGALAALKGNPWKKAVVQESGWREDSWGDEEWTTGSANLQPSAWTRETPKVPIAVSLNRWSVLDQESSAAATARTEVSRKHSASSSSVPKLESGSSGSVPGQHQGNANFTEVSEVVDDWEKAYE 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2217 1144 CDD NF-X1-zinc-finger 540 583 - -
Mibi02g2217 1144 SUPERFAMILY RING/U-box 164 224 - -
Mibi02g2217 1144 ProSiteProfiles Zinc finger RING-type profile. 165 221 IPR001841 -
Mibi02g2217 1144 ProSiteProfiles Zinc finger PHD-type profile. 162 223 IPR019787 -
Mibi02g2217 1144 CDD RING-CH-C4HC3_NFX1 164 221 - -
Mibi02g2217 1144 MobiDBLite consensus disorder prediction 1091 1144 - -
Mibi02g2217 1144 CDD NF-X1-zinc-finger 597 645 - -
Mibi02g2217 1144 CDD NF-X1-zinc-finger 446 494 - -
Mibi02g2217 1144 SMART znfxneu3 550 569 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 699 720 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 512 542 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 607 625 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 398 417 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 334 353 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 456 475 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 660 690 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 SMART znfxneu3 279 297 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 MobiDBLite consensus disorder prediction 50 118 - -
Mibi02g2217 1144 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 94 1050 IPR034078 GO:0003700
Mibi02g2217 1144 CDD NF-X1-zinc-finger 254 317 - -
Mibi02g2217 1144 CDD NF-X1-zinc-finger 324 372 - -
Mibi02g2217 1144 MobiDBLite consensus disorder prediction 1091 1131 - -
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 660 675 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 281 296 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 512 523 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 607 624 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 398 415 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 550 567 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 456 474 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 Pfam NF-X1 type zinc finger 334 352 IPR000967 GO:0005634|GO:0008270
Mibi02g2217 1144 MobiDBLite consensus disorder prediction 1043 1063 - -
Mibi02g2217 1144 MobiDBLite consensus disorder prediction 70 108 - -
Mibi02g2217 1144 CDD NF-X1-zinc-finger 388 433 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Mibi02g2217 zf-NF-X1 6.9e-05 No_clan