Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2160 ATGGCATCAAAAAGCAAGTCGCTTGCACTTCTCAAAAGTACTGTTGCAGCACATAAAAACTCTAACCGGGTGCGGAGAAAAAGAGCAAAGCATAGCGCAGTACCTTCCAGAATCAAAACCCCAGACCTCGTCTTCCCTTTGTTCCTCCTTCTCCACTTGCGTGCGTGCTCACTTCAACCTCTGTCTCTCTCTGCACATTTTCTCTATTCTCTCACCATGGATATTGAGGAGGACATCCGTTCTCTACAGCTTGATTCGGCAGAAGACAATGGTGTTGTTAATCCGGAGGATGCAAAGCCAGAAGAAGTTGAGAATCCTGCTAAGATGGACGAAGTTTCAGGTCTAAAGCAGGAAGCTAAGGCACGGCCTGTCCACGCTGAGCCTAAAGACAAAGGAATTCCTCCAGTGGATGATCAAGAGGATGTGACAGATAAGAGAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACTACTGGAGGCCAGATTCTTTTCCTAAGTGGTCAGGTTGATGAACGTACTATCCAAAAATATGAAAAAGAAGCGAAGGACAAAAGTAGAGAAAGTTGGTATATGGCTTATATAATGGACACTAATGAAGAGGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGGGCACATTTTGAGACAGAAAAAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGCTATGTCCCCAACATGATTAGTGGTGCAGCTCAAGCTGATATCGGAGTTTTGGTTATTTCTGCTCGAAAGGGAGAATTTGAAACTGGGTATGAAAGAGGTGGACAAACCCGTGAACATGTTCAGCTTGCTAAAACATTGGGTGTGTCTAAGCTGATTGTTGTTGTTAATAAAATGGACGAGCCTACAGTGAAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCTTTTCTCAGGTCATCGGGCTACAATGTGAAGAAAGATGTCCTGTTTTTACCATTATCTGGGCTGGCTGGCGCAAACATGAAAACAAGGGTGGATAAAAGCATTTGTCCTTGGTGGGATGGTCCCTGCTTATTTGAAGCCCTTGATGGTGTTGAAATTCCACCTCGAGACCCCAAAGGCCCTCTTAGGATGCCTATTCTTGACAAATTCAAAGACATGGGAACTGTTGTCATGGGAAAAGTGGAATCTGGTACTATACGTGAGGGGGATTCCTTGTTGGTTATGCCAAATAAGGATCATGTAAAAGTTGTTGCTGTATTCATTGATGAAAATAGGGTCAAACGTGCTGGTCCTGGTGAGAATTTACGGGTTAGAATATCTGGTGTGGAAGAAGAAGACATTCTTGACGGGTTCGTTCTGTCTAGTGTTGAAAGTCCAATACCTGCTGTCACTGAGTTTGTGGCTCAGCTGCAGATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTTTGCACATCCACAGTGTTGTCGAAGAATGTGAGATTGTTGAGCTCCTACAGCAAATTGATCCAAAGACAAAGAAACCTATGAAAAAGAAACCTCTCTTTGTGAAGAATGGTGCTGTTGTTGTCTGCCGTGTTCAGGTTAATAATATGATATGCGTTGAGAAGTTTTCTGATTTCCCTCAACTCGGGAGGTTCACTCTTCGCACAGAGGGAAAAACTGTGGCGGTGGGAAAAGTCACTGGTTTTTAA 1719 0.4316 MASKSKSLALLKSTVAAHKNSNRVRRKRAKHSAVPSRIKTPDLVFPLFLLLHLRACSLQPLSLSAHFLYSLTMDIEEDIRSLQLDSAEDNGVVNPEDAKPEEVENPAKMDEVSGLKQEAKARPVHAEPKDKGIPPVDDQEDVTDKRRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDEPTVKWSKERYDEIESKMIPFLRSSGYNVKKDVLFLPLSGLAGANMKTRVDKSICPWWDGPCLFEALDGVEIPPRDPKGPLRMPILDKFKDMGTVVMGKVESGTIREGDSLLVMPNKDHVKVVAVFIDENRVKRAGPGENLRVRISGVEEEDILDGFVLSSVESPIPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKPLFVKNGAVVVCRVQVNNMICVEKFSDFPQLGRFTLRTEGKTVAVGKVTGF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2160 572 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 202 217 IPR031157 -
Mibi02g2160 572 PANTHER TRANSLATION FACTOR 140 570 - -
Mibi02g2160 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 381 IPR027417 -
Mibi02g2160 572 Gene3D Translation factors 375 460 - -
Mibi02g2160 572 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 374 460 - -
Mibi02g2160 572 CDD eRF3_C_III 464 570 - -
Mibi02g2160 572 Gene3D Translation factors 465 572 - -
Mibi02g2160 572 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 129 370 - -
Mibi02g2160 572 FunFam Putative translation elongation/initiation factor family protein 464 572 - -
Mibi02g2160 572 PRINTS GTP-binding elongation factor signature 245 256 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 PRINTS GTP-binding elongation factor signature 289 298 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 PRINTS GTP-binding elongation factor signature 150 163 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 PRINTS GTP-binding elongation factor signature 229 239 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 CDD EF1_alpha 150 371 - -
Mibi02g2160 572 SUPERFAMILY Translation proteins 369 462 IPR009000 -
Mibi02g2160 572 Pfam Elongation factor Tu GTP binding domain 147 350 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 Gene3D - 135 369 IPR027417 -
Mibi02g2160 572 MobiDBLite consensus disorder prediction 92 141 - -
Mibi02g2160 572 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 146 375 IPR000795 GO:0003924|GO:0005525
Mibi02g2160 572 CDD eRF3_II 377 458 - -
Mibi02g2160 572 Pfam Elongation factor Tu domain 2 390 456 IPR004161 GO:0005525
Mibi02g2160 572 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 466 571 IPR009001 -
Mibi02g2160 572 MobiDBLite consensus disorder prediction 86 141 - -
Mibi02g2160 572 Pfam Elongation factor Tu C-terminal domain 463 570 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2160 Mibi-ChrMibi02 24085227 24094794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2160 148 567 Eukaryotic Initiation Factors Gene Family AT5G60390 39.007 4.38e-97 301