Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2023 ATGGATTTAGAGGAAAAGTTCCCTGCTAAAGTTTCCGGCCTTCAAAGCCTTTCTTCCAGCGTACAAAGCACTCCAGAGAAAAATGGCCATTCAGATGATGCCTCAAGAAGTCCAGAACTCTTGCAGGAGTTCCTTAAATCTGGTCCAAAAAAGGAACTTTTACGGACATGCTTTGATAAGGAGAAAAAGAACATTTCAGCAAAAGGCAGGGTGACTGAAAATAAGTCAAGTAAGGTAATCAAGAAAAATGATTCAAAGAAGGTTTCTAGCAGTAACCAGTCCTCTAAAAAGCAACATAGAAAGGGAGAAAATCCCACAAGACTCCTGCCAACGCCTGATGAGTCTTCAGATTTTAGGCACTCAAACAACTGGATCTGTAAAAATTCTGCCTGTAGAGCTGTTCTGTCTATAGACGACACATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTCTGCACATCTGAATCTGCTCAGAGTGATTCCTGCGGGTTATCTTGCCATATCGAGTGTGCCATCCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAATTGATGCAACTAGATGGAGGCTATTGTTGTGCAACTTGTGGTAAAGTTACAGGGATACTTGGATGTTGGAGAAAACAGTTAAGTATAGCAAAAGACGCTCGACGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTTCTAAATGGGACTTCGAAGTTTAAAGAACTCCACGAGATTGTGCAAGAGGCGAAGGCTAAACTGGAAACAGAAGTTGGTCCAGTTAATGGTGTTTCTGCCAAGATGGCTCGGGGCATTGTCAGCAGACTCTCTATTGCCAGTGATGTGCAGAAATTGTGCTCACTTGCTGTTGAGAAAGCTGACGAGTGGCTGGCCTCTGTTTCCAATGTAAATCCAGATTCAAGAGAGGGTTCGCTCCCTGCCGCCTGCAAGTTTATTTTTGAAGAGGTGACAGCTTCCTCAGTCAAAATCATTTTGATTGAAATGTCTAATTCATCAACTGAGGACATCAAAGGCTTCAAGCTTTGGTATTACAAGAGTGGGGAGGAATTGCACAGTAAAGATCCTGTTTGTGTTTTCCCAAAATCTCAGAGGAGGATTCTGATATCAAACCTCCAACCTTGCACAGAATATACATTTCGGATTGTATCTTACACGGATACATGTGATCGGGGTCATTCTGAGGCTAAGTGTTTCACTAAGAGCATTGAAATAATTAGAAAAAATCCTTCTTCATTAGCTGCTTTGAATCATAAAGAGAACCACAAAACTGGAGGCACTCCTTCTGACCCCAAAAGGGAGCCTAATCCCACAATGGAAGACTCTGGATTTAAGGTTCGAGATCTTGGAAAAGTTCTGCGCCTTGCTTGGGCTCAAGAACAAGGTTTCTTTGAAGGGTTTTGCTGTGCTGATGTGAAAAATTGCTGTGGAGGAAGTGAAATGGTTGGACCTAAATATTCAGAAGAGACATTGCCTAAAGTTTCAAGAGGCCTTGATTTAAATGTTGTCTCAGTTCCTGATTTAAATGAAGAATTAACACCTCCTTTTGAGTCTTCTAGGGATGAAGATAATGGTTGCACCTTGCAGCAGGCTATTGGGGCTGATGATGATGCTGCATCTCATGATATTGAGAAGATTGGTTTAGCAAGATCCCATGGCAGTGGTGACTCACAAACCTGGGCCCACAGGCCAAATGGAGAGGTGCCAGCTGTCGACTCACGTGTAGACACTGCATGCCGGAAAAGATTAGCAAGCACTAATGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGATCTCCTTTACGTGTTTCTGATGGATCTTGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGCGAGGGCCACATTAAGCAGGAATTTCGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCAACGGAGCAAGAACGTAGGGTGGTCAACACCTATATTCAAACTCTGATTGATGACCCAAGTAGTTTGGCTGGTCAACTGGTTGACTCCTTTTCTGATATTCTATCTAACAAGAGGCCAAGAAATGGATTCTGTGGTAAGCTTTGGCATTAA 2151 0.4226 MDLEEKFPAKVSGLQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGPKKELLRTCFDKEKKNISAKGRVTENKSSKVIKKNDSKKVSSSNQSSKKQHRKGENPTRLLPTPDESSDFRHSNNWICKNSACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQSDSCGLSCHIECAIQHEKVGVVDHGQLMQLDGGYCCATCGKVTGILGCWRKQLSIAKDARRVDVLCYRIYLSYRLLNGTSKFKELHEIVQEAKAKLETEVGPVNGVSAKMARGIVSRLSIASDVQKLCSLAVEKADEWLASVSNVNPDSREGSLPAACKFIFEEVTASSVKIILIEMSNSSTEDIKGFKLWYYKSGEELHSKDPVCVFPKSQRRILISNLQPCTEYTFRIVSYTDTCDRGHSEAKCFTKSIEIIRKNPSSLAALNHKENHKTGGTPSDPKREPNPTMEDSGFKVRDLGKVLRLAWAQEQGFFEGFCCADVKNCCGGSEMVGPKYSEETLPKVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAIGADDDAASHDIEKIGLARSHGSGDSQTWAHRPNGEVPAVDSRVDTACRKRLASTNEETHDCDSTLINGSPLRVSDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLIDDPSSLAGQLVDSFSDILSNKRPRNGFCGKLWH 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2023 716 Gene3D Immunoglobulins 310 416 IPR013783 -
Mibi02g2023 716 Pfam PHD - plant homeodomain finger protein 126 244 IPR032881 -
Mibi02g2023 716 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 716 IPR044514 GO:0010048|GO:0040029
Mibi02g2023 716 MobiDBLite consensus disorder prediction 435 462 - -
Mibi02g2023 716 MobiDBLite consensus disorder prediction 68 118 - -
Mibi02g2023 716 CDD FN3 330 406 IPR003961 GO:0005515
Mibi02g2023 716 MobiDBLite consensus disorder prediction 12 28 - -
Mibi02g2023 716 MobiDBLite consensus disorder prediction 1 47 - -
Mibi02g2023 716 MobiDBLite consensus disorder prediction 29 47 - -
Mibi02g2023 716 MobiDBLite consensus disorder prediction 569 590 - -
Mibi02g2023 716 MobiDBLite consensus disorder prediction 442 462 - -
Mibi02g2023 716 ProSiteProfiles Fibronectin type-III domain profile. 325 424 IPR003961 GO:0005515
Mibi02g2023 716 SUPERFAMILY Fibronectin type III 333 414 IPR036116 GO:0005515
Mibi02g2023 716 MobiDBLite consensus disorder prediction 68 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2023 Mibi-ChrMibi02 21577193 21582086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2023 87 709 PHD Gene Family AT3G24440 47.426 4.94e-180 525