Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g2020 ATGGCGAACCGACTAAAGGAAGATGAGAAGAATGAACGGATAATTCGGGGTCTTCTGAAACTCCAAGACAACCGTAGATGTATTAATTGTGGCAGCCTGGGACCGCAATATGTATGCACAAATTTTTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGAGTTAAATCAATTTCAATGGCTAAATTTACTTCACAAGAAGTTAGTGCACTTCAGGAAGGGGGAAACCAGCGTGCAAGGGAAATTTATTTTAAAGAATGGGATCCACAACGTCATTCTCTTCCTGATAGCAGTAATATTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGGACCTATGACAAACCACCTAGAGGAAAGATGGGTGACAAGGATGAGTTCTATGAAAACAGAAGAGTTGAGACATACCAGGGAGGATCTAAAAGCCCGCCATATGAGGATACATATGAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGACAATATGGTGATTATAGGAGAAGCCCAGGTCGTCCACCAGTAATCAATGACTGGCGTCGTGAAGATAGATTTGGAGATCGTAGATCATCTGATGGAGATTATAAACTGGAGGGCCAATCACCTGAGCGAGCAAAAGATCTTGATTCTTCAAGTTCGCCTGTTGTACGTCCTGTTAGAGATATTTTGGGAGAAAATGTGGTTCCTCTTCGAATAAGTGAACCCCCAAAAACAAACAGTGTAAAGGCTGCTGATGGCTCTGCTTTCACACAGAGAACTGCATCTTCCAGTAGCTTAGCATCTAGTAATGGAAACGCAGCAGAAGCTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGAGCCTGAACATCCTGTTGCTCCAGCAATTCCTCAAGCTCAACAAACCACTACTGTCCAATCTGTTGTGCAGCCAGCAAATTCTAGTGATGACAACTGGGCATCTTTTGATGTTGCCCCTGCAGCAAAAACAACCCAAACTCCTTCAAATTTAAGTCCACTTGAATCTGTTCTCTCTCAACTATCGATGCCATCCCCTGCCCCTGCCCCTGCCCCTGCCCCAGCACATGCACCTGGAGTTCAAGGGCCTCAGCAAGCATCAGCTATCACTGCCACCGCTGCTGGAGCTGGAACTCTTGGCAACTTCTCATCAGTGCCACCAAGTGGCACTTCTGTAACAGCCCCTGGGTTGATGACAGTGCCGCCGGTCAACAACCCGGGCCAGTGGGCCAGTGTGCAACACAACCAACCTGTGTTCCCTACCACTGGCAGTCATCCTACTACTCAACAATTCATTCCGTCGGCAGGTGGATATTTGAATAGTCAGCAGTGGAGTGTATCTCCAGTGCCTACAATGCAAGGGCACCCTAGCATACAAATGCCACATGCATCGTCTCTTATCTCAAAGCCTACCAATGAGGTTAGCTCTGGCGCTGCCTCCCAGCCTTCAAAAGAAGTGCAACCCAGTGGAAGGCAAGCACTTCCTGAGGTATTCCTTGCTCCTCATCTGTGCTGTATTAAGTATGATCTTTTCACTGCAAGGTATTCATCCTTCACTTCTCCGGCTCCAGGGTGGCAAATGAGACCTCCTCATGGCATGGGTATCTATATGCAATATAATACTGCAGCGGTACAGTTATAA 1722 0.4617 MANRLKEDEKNERIIRGLLKLQDNRRCINCGSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVSALQEGGNQRAREIYFKEWDPQRHSLPDSSNIDRLRDFIKHVYVDRRYSGERTYDKPPRGKMGDKDEFYENRRVETYQGGSKSPPYEDTYERRYSDRSSPGGRSPGYDQESRQYGDYRRSPGRPPVINDWRREDRFGDRRSSDGDYKLEGQSPERAKDLDSSSSPVVRPVRDILGENVVPLRISEPPKTNSVKAADGSAFTQRTASSSSLASSNGNAAEAKLETTKSLIDFDAEPEHPVAPAIPQAQQTTTVQSVVQPANSSDDNWASFDVAPAAKTTQTPSNLSPLESVLSQLSMPSPAPAPAPAPAHAPGVQGPQQASAITATAAGAGTLGNFSSVPPSGTSVTAPGLMTVPPVNNPGQWASVQHNQPVFPTTGSHPTTQQFIPSAGGYLNSQQWSVSPVPTMQGHPSIQMPHASSLISKPTNEVSSGAASQPSKEVQPSGRQALPEVFLAPHLCCIKYDLFTARYSSFTSPAPGWQMRPPHGMGIYMQYNTAAVQL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g2020 573 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Mibi02g2020 573 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Mibi02g2020 573 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Mibi02g2020 573 MobiDBLite consensus disorder prediction 124 147 - -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 476 515 - -
Mibi02g2020 573 CDD ArfGap_AGFG 12 122 - -
Mibi02g2020 573 SMART arf_gap_3 15 130 IPR001164 GO:0005096
Mibi02g2020 573 MobiDBLite consensus disorder prediction 476 516 - -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 366 394 - -
Mibi02g2020 573 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Mibi02g2020 573 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Mibi02g2020 573 Coils Coil 568 573 - -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 268 292 - -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 318 341 - -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 199 230 - -
Mibi02g2020 573 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Mibi02g2020 573 MobiDBLite consensus disorder prediction 124 292 - -
Mibi02g2020 573 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Mibi02g2020 573 PANTHER ARFGAP/RECO-RELATED 1 562 IPR044820 GO:0005096
Mibi02g2020 573 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g2020 Mibi-ChrMibi02 21493328 21498062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g2020 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 3.90e-13 68.9