Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1974 ATGACGGACATGGACCCACCGCCTCCTCCAAAGAGCTGGAGCATCTACTCCCGAACTGAGATCCTGGCCAAGTACCAAGTCATGGACCGTATCGGCTCCGGCGCTTACTCCGACGTCTACAAAGGTCGCCGTCTCTCCGACGACCTCATCGTCGCCCTCAAAGAAGTCCACGATTACCAATCCGCCATCCGCGAAATCGAGGCCTTGCAGATCCTCCAGGGCTCCCCTAACGTCGTCGTTTTGCACGAGTACTTCTGGCGCGAAGACGAAGACGCCGTCCTCGTTCTTGAGTTTCTGAGGACCGACCTGTTGTCCGTTATTAAACAGGCTAAGAAGGAGGAGGGTTTAGGGCTTCGCGTTGGCGAGATTAAGCAGTGGATGATCCAGATTCTCTGCGGCGTCGATGCCTGTCACTCGAATTTGATCATGCATCGAGACTTGAAGCCTGGTAATCTGTTGATTTCCGATGATGGCGTTCTGAAATTGGCTGATTTTGGACAGGCGAGGATACTTATGGAGCCTGGATTTCAAGCTATGGATGAAAACCCACCGCCATCTTATGAAGATGATGTTGCAAATCATGAGAGAACTCTTCAACATCCTGAAGTATTTCCTCAGACACACAACCAAAACCAGCAAGGCTATGGAAATCAGGAACAAGGAAGTGTAACTCATGATGAATATTTTAGAGCATTAGAAGAGATGAAAACTAAGGGCTCCACAGATGACATGGATAAGGATGTGAACTTCCAGGATGGAAATACATCTTGTCTTGCAACTTGCACAATAAGTGACATAGAAGATGACTTTATGAAGAGTTCGTTTACTTATGAAGCCGATGACAGGGACAATGAACAAGGTGGTCTCACATCATGCGTTGGAACCCGATGGTACCGGTCTCCTGAACTGCTTTATGGATCGAATGACTACGAGTTAGAGATTGATCTCTGGTCATTGGGCTGCATTTTTGCAGAGCTCCTGAATCTGGAGCCCTTATTTCCTGGGTCAGGTGATATTGACCAGCTCAGCAGAATTATTGATGTTTTAGGCAACCTCAATGAGGAAGTTTGGCCTGGTTGTTCCAAGCTTCCGGATTATGAGAAAATCTCCTTCACTAAGGTGGAGAACCCTCCGGGTCTTGAAGGCTGCCTGCCCAACCGATCCCCTGAAGAAGTCTCTCTTGTGAAGAAACTGGTTTGTTATGATCCGGCTAGAAGAGCTACAGCAATGGAGCTTCTTCAAGACAAGTATTTTAGTGAAGAACCTCTACCTGTACCTATTTCTGAGCTGCGAGTTCCTTTGACAAGGACTACACTTGATGAAGATTCTCATAATCTCGATGATCTGGATTTATCTGATTATGAGGACTTTGACTCTGTGAATGTCATCAGAACTGGCACTGGTTTCTCTATACAATTTCCCTGA 1425 0.4695 MTDMDPPPPPKSWSIYSRTEILAKYQVMDRIGSGAYSDVYKGRRLSDDLIVALKEVHDYQSAIREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLLSVIKQAKKEEGLGLRVGEIKQWMIQILCGVDACHSNLIMHRDLKPGNLLISDDGVLKLADFGQARILMEPGFQAMDENPPPSYEDDVANHERTLQHPEVFPQTHNQNQQGYGNQEQGSVTHDEYFRALEEMKTKGSTDDMDKDVNFQDGNTSCLATCTISDIEDDFMKSSFTYEADDRDNEQGGLTSCVGTRWYRSPELLYGSNDYELEIDLWSLGCIFAELLNLEPLFPGSGDIDQLSRIIDVLGNLNEEVWPGCSKLPDYEKISFTKVENPPGLEGCLPNRSPEEVSLVKKLVCYDPARRATAMELLQDKYFSEEPLPVPISELRVPLTRTTLDEDSHNLDDLDLSDYEDFDSVNVIRTGTGFSIQFP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1974 474 Gene3D Transferase(Phosphotransferase) domain 1 17 217 - -
Mibi02g1974 474 FunFam Cyclin-dependent kinase F-1 16 110 - -
Mibi02g1974 474 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Mibi02g1974 474 SMART serkin_6 25 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g1974 474 Gene3D Transferase(Phosphotransferase) domain 1 258 425 - -
Mibi02g1974 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Mibi02g1974 474 PANTHER CELL DIVISION PROTEIN KINASE 24 424 - -
Mibi02g1974 474 Pfam Protein kinase domain 25 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g1974 474 Pfam Protein kinase domain 286 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g1974 474 SUPERFAMILY Protein kinase-like (PK-like) 10 445 IPR011009 -
Mibi02g1974 474 ProSiteProfiles Protein kinase domain profile. 25 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1974 Mibi-ChrMibi02 21011740 21013538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1974 9 474 Core Cell Cycle Gene Families AT4G28980 62.893 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Mibi02g1974 Pkinase 5.9e-32 CL0016