Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1971 ATGTCCACCACCACCACCACCACCTCCCAAATCCTCCTCCACACCACCGCCTTCCTCTCCGATGTCGTTTCCCAGTCCGATCTCCGACGCCGCCTCACTTCCATCCTCCTTCACCACACTCCAATCCCCAGCCAAATCACCCTCAAACACCTCAATCTCGCCTCCAACACCTTCGATAACGCCATCTCCCTCTCCAACCCTACCATCACATCCTCCTCCCTCACTCTCGCCGAGAAACTCCTCCTCCCTCTCCCTCCCTCTCCCTTTTCCTCCTTCCTTCTCTCTCTCATCCACACCCTCCACAATCAACCACTCCAAGCCGCCTTCAATCTCCTTCACCTCTTCTATTTGAGCCCTAATTTGGCCAGATCTGAAATCGCTCCCGTTCTCTATGACCACCTCTTTTCTCTCCACCTCCTCCCTGTTTTCCGATCTTTCGATGAGCAGAGAGCGGAGATACTTTCGTCTGGTTCAGCGATTTCTTCGTGCTGTGAGGATGATTGCTCCATTTTTGAGGATTCTGTTGTCTTTCCCCCCACGAAATTGTTGTCGCGGATGAGCGACGATCAGGCCTCGAAGCTGAGGGAATTGGAGAGGGATTATGAAGTGGCGATTGATGATAATTGCAGGATTGTTGCTGAGTACTTCAAAGAGGTTTTGGCGAATGATACTGGCGAGTCGTCGATTAGTCCGCCATTGTCGGTTGTGAAGAACAGTAGAGATCATGCAGAATTGGAGCATGGCCGAGAGGAGATGAAGGAAATAAATGTGCCTTTGTTCAAGAACGGACGGTATAATCCAATTTGGACCGAACGGGAAACGTCTATTGAATGTTCAAGTAGCAGTTTCAGCGCCAAGTGCTCGAATACACCGGTTTACCCTCAAAGAGTCTCTCCCAAAATCTTTAAACACCAAGAATCTTCTAAAAAAGTGTCCTTACCATCTCGTTCAGACATAGACGCTGAAACTGAGTCTTCCGAGGATGAAACCATGCCTTGTTATTCATCAGAATCTGAGGCAGAAACTAAGGAAAAAGACACGACAGTACTACCGGAGCCTCGACGAAGCCAAATCCAAGAATCTGTTCAAATTAATATTGCAGAACTCGGAGGTTCCCCAGATTACACCATGGCAGATTATGGCCACCAGCCTCCTGGAAATGGAAAAAGTACACCCCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTGATGATCCAGTGACTCTTGAGACAGGACAGACATATGAACGGAAAGCTATCGAAGAATGGTTCAACAGGGGGAACTCAACCTGTCCAATTACCCGCCAGAAGCTGCAAAATACCCAGCTTCCTAAGACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATCCCATCTCTATCTCCATCTCCATCTGAGAGTCTACTTGCTGAAACTGAGGTAGCAATCAAGTCAACAACGCCTTCAACTTCTCCTAATAGCGTTATAACACAAGCCAATATTGATGGGATGATTAGTGAGTTACGACATGCAATTAACAACCTGTATATGTCAGAGATGCTCGAGGAATCTGAATTGGCTGTGCTTCAAATTGAGCGATTTTGGAAAGAAGTAAACTTTGGAGTGGATATCCAGAGCATGTTATCAAAACCTCCCATCATTAATGGGTTCATGGAGATTTTATTTAATTCCGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTTGCCGAGATGGGTTCTAGGGACAATGCTGTCATTCAGACGCTTACCCGAGTGGACTCGGATGTAGAATGTATCATGGCACTTTTCAAGAAAGGCTTGACAGAGGCTGTTGTATTGATATATCTCCTGAAGCCTTCTACTATGACTCTCGCAGAAATGGCCATATGGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAAGACTTGCTTAAGATGTGTGTAAAGCCCAAGTCAGCTGCTGTATTTCTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAAATGGTAGAGTAATTGGATACATAGTTGGCTGTTTTCGAGCAGAGTGGGCAGAGGAGAGAATTGCCGCAATGGATATCTTATTAAGATGTATCCAGGAGGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCTGTCTCCCATTTTGGAAAGCTTCACTGGGGCAAACGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATCAAATAGGAGGACATTGAATGAACAAATGCTACACATTATAAAAGAAGAAGGTGCCTTCAGTACAATGCACACTTTCCTCGCTTATATGCAGACAGCCCTTCAAGATCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCCGAAACAATGATTTCCCGGCTACCCAAGTAGTTGCTGCTCAGACAATAGTGTCATTACAAGGGAGATTCAACTTTGCAGGAAAGCCTCTTATTAGAGAAGTACTTCTCAACCGTGCTGGCTTTAACAGAAATCATAGGAGTCTTGATCAGCTGGATTATATCAGCAATATCAGTGGAGAAATTGAAATGAATCCAGAAGAAGAGCAGGCAGCTGATGACTGGGAGAGAAAAGTTGCGTCTGTTTTAGTTGGCCATGAGTTTGGCCTACTTTTTGAGGCTTTAGCTGAAGGCCTGAAAAGCCGAAGCACACAACTAAGTTCAGCATGCTTTATATCAGCCACATGGCTTACATACATGCTTACCGTTCTACCGGATACTGGAATACGAGGAGCAGCATGTGTCTGCATGCTCAAGCGCTTTGTATTTATTTTAAAATCTGCTAAGGACACTGAAGATAGAATCCTTTCTATGCTTGCTTTAAATAGCTTTCTTCAGTACCCTGATGGATTGCTTGATCTTACTTCCTACACTAAGGACGTCCTAAAAGGTCTTAGAGAGCTAAAGAGATTCTCCCCTCTGGCATCTGAATTGCTTAACGTTCTGGTTGAAGAGAACGAATCGAAAGCCGGCATCTGGATGCATAAAGAGTTAATTCAGGTAGACTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCATAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGATAGTAAGGGGGAGCTCATTCCATCTGATACAAGAGGCGCAAGAGCACACGAAGGCGGTTTCAAGTTTAGCAATTTCAGAATCTGGTGATAGACTGTATAGCGGTTCGCTTGATCGGTTTGTAAAGGTCTGGTCTATAGGAAAGTCAGCAATACAGTGTGTGCAGGTGCTTGATACGAAAGTTCAAATTCACAATTTAACCGTAGCCAACAGCAAATGCTGCTACATTCCTCAGGGTAATGGTGTTAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGGTGCTTCGCTCTTGTTAATGAGAGACTATATTGCGGATGCCATGACAGCAGTATTCAGGAGATAGATTTGGAAACAGGAACAGTTAATACCATTCAAAGTGGTTCTAAGAGATTGCTTGGTAAAGCAAATCCTGTTTATGCCCTGCAAATTCGTGGCGAACATATATATTCGGCTAGTTCTTCCTTGGATGGAGCTGTTATAAAGATATGGAACACTTCTAATTACAGTATGATTGGATCACTGGTAATTTCATCAGAAGTGAGGACGATGGCAACGAGCTCGGAATTAATTTACTTGGGGTGTAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACAGAACAGAATCGATACATTACAGATTGGTACAAATGGTAGGATTGCCTGCATGGCTGTCGATGGAAATGAAGAAATTTTGGTCATTGGAACCTCTGATGGCAGAATTCGGGCATGGGGAATAAACTAA 4011 0.4388 MSTTTTTTSQILLHTTAFLSDVVSQSDLRRRLTSILLHHTPIPSQITLKHLNLASNTFDNAISLSNPTITSSSLTLAEKLLLPLPPSPFSSFLLSLIHTLHNQPLQAAFNLLHLFYLSPNLARSEIAPVLYDHLFSLHLLPVFRSFDEQRAEILSSGSAISSCCEDDCSIFEDSVVFPPTKLLSRMSDDQASKLRELERDYEVAIDDNCRIVAEYFKEVLANDTGESSISPPLSVVKNSRDHAELEHGREEMKEINVPLFKNGRYNPIWTERETSIECSSSSFSAKCSNTPVYPQRVSPKIFKHQESSKKVSLPSRSDIDAETESSEDETMPCYSSESEAETKEKDTTVLPEPRRSQIQESVQINIAELGGSPDYTMADYGHQPPGNGKSTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSLSPSPSESLLAETEVAIKSTTPSTSPNSVITQANIDGMISELRHAINNLYMSEMLEESELAVLQIERFWKEVNFGVDIQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSTMTLAEMAIWESLITVFDKKEEDLLKMCVKPKSAAVFLLARILGSNEERIASSVAKTLINGRVIGYIVGCFRAEWAEERIAAMDILLRCIQEDGTCRHLIAEKVELSPILESFTGANDAERFKIIQFFSELVKSNRRTLNEQMLHIIKEEGAFSTMHTFLAYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAAQTIVSLQGRFNFAGKPLIREVLLNRAGFNRNHRSLDQLDYISNISGEIEMNPEEEQAADDWERKVASVLVGHEFGLLFEALAEGLKSRSTQLSSACFISATWLTYMLTVLPDTGIRGAACVCMLKRFVFILKSAKDTEDRILSMLALNSFLQYPDGLLDLTSYTKDVLKGLRELKRFSPLASELLNVLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWIVRGSSFHLIQEAQEHTKAVSSLAISESGDRLYSGSLDRFVKVWSIGKSAIQCVQVLDTKVQIHNLTVANSKCCYIPQGNGVKVQSLNGESRLLNSNKYVRCFALVNERLYCGCHDSSIQEIDLETGTVNTIQSGSKRLLGKANPVYALQIRGEHIYSASSSLDGAVIKIWNTSNYSMIGSLVISSEVRTMATSSELIYLGCKGGAVEIWDRKKQNRIDTLQIGTNGRIACMAVDGNEEILVIGTSDGRIRAWGIN 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1971 1336 MobiDBLite consensus disorder prediction 302 321 - -
Mibi02g1971 1336 SUPERFAMILY RING/U-box 388 468 - -
Mibi02g1971 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1093 1126 - -
Mibi02g1971 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1302 1336 - -
Mibi02g1971 1336 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1335 - -
Mibi02g1971 1336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 469 IPR013083 -
Mibi02g1971 1336 Gene3D - 1041 1157 IPR015943 GO:0005515
Mibi02g1971 1336 SUPERFAMILY WD40 repeat-like 1064 1335 IPR036322 GO:0005515
Mibi02g1971 1336 MobiDBLite consensus disorder prediction 299 357 - -
Mibi02g1971 1336 Gene3D - 541 868 IPR011989 -
Mibi02g1971 1336 SMART WD40_4 1294 1334 IPR001680 GO:0005515
Mibi02g1971 1336 SMART WD40_4 1160 1203 IPR001680 GO:0005515
Mibi02g1971 1336 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Mibi02g1971 1336 SMART WD40_4 1216 1252 IPR001680 GO:0005515
Mibi02g1971 1336 SMART WD40_4 1044 1081 IPR001680 GO:0005515
Mibi02g1971 1336 SMART WD40_4 1255 1291 IPR001680 GO:0005515
Mibi02g1971 1336 Pfam WD domain, G-beta repeat 1095 1125 IPR001680 GO:0005515
Mibi02g1971 1336 SUPERFAMILY ARM repeat 511 1015 IPR016024 -
Mibi02g1971 1336 Pfam U-box domain 393 463 IPR003613 GO:0004842|GO:0016567
Mibi02g1971 1336 Gene3D - 1159 1336 IPR015943 GO:0005515
Mibi02g1971 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1093 1126 IPR001680 GO:0005515
Mibi02g1971 1336 CDD RING-Ubox_PUB 396 438 IPR045210 -
Mibi02g1971 1336 ProSiteProfiles U-box domain profile. 391 466 IPR003613 GO:0004842|GO:0016567
Mibi02g1971 1336 SMART Ubox_2 395 459 IPR003613 GO:0004842|GO:0016567
Mibi02g1971 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1302 1336 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1971 Mibi-ChrMibi02 20966088 20973279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1971 391 498 U-box Gene Family AT1G67530 43.519 3.04e-18 89.0