Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1960 ATGAACCAACTGGGTCTTCCTCTTCTCTTTCTACTTTTCTTCCATGTCACAGCACAACAACAGATGAATGATAGTTCACCTTCAGCAGATGCCGTCGAAAGTTTCCAACCAAGTTTAGCAGTTGTCATAGGAATACTATGCCTCATGTTTTCACTCACGTTCATTCTTCTCTTGTATGCCAAATTCTGTCAACGAAGAGCTTCAGCTCACGTTGACCCTGAGAATAATCACCCTGAACTTGCAAGATCAAGGTCCAGAAGATTCTCTGGAATCGACAAGACTGTCATAGAATCTCTCCCTTTTTTCAGATTCTCTTCCCTTAAAGGCTTCAAAGAAGGCCTTGAATGTGCGGTGTGCTTGTCAAAATTTGAAGATGTTGAAATCCTCAGGCTTCTTCCCAAGTGCAAACATGCTTTTCACATCGATTGTATTGATCATTGGCTTGAAAGACATTCTAGCTGTCCTCTATGTAGGCGAAAAGTCAGTTCTGATGATCCCACCATGTTGACTTATTCAAACAGTTTGAGGCTTTTAACAAACCAATCAGAGAATAATGGTGAGGACCCCAATATAGAGATCTTTGTACAGAGGGAAGAAGATCAGCGCTATGGTCCTTCCTCTTCTTCTTTTTCTTCTAGATTCCGAATTGGAAGCAGCTTTAGAAAATCTGGGAAGGGTATTGCTATTAAAGAAGAAGAATTGCCAATCCAAGAAGAAGAATCAGAGCATGATGATGGTGATGGAAAGTTGTTTCACAAACATAACCACAAGATTACTGTGAGTGATGTGGTGTTCAAGCATCGTTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTTTGAATTCAGAGATGATTATGAATTCAGCGCACAGCAAAAGATTCGATTTTTCAGAACCAAATGGTGAAAAGATTCAAGCTTCAACATCAGGAGAAAATGGGCATATAATTAATATAAAGGAGGAGATGGAGAGGAAGATATCTTTTGAGACAAAGGTCGGTGCATTAAACTCAGTTTTAGATTCATCAGAATGTGTGGGAACTTCATCTTCTAGTCATACATCAAAGCATGTGAATCCGGGGGACAAAAGATCCATGTCAGAAATCACTGGTGTGGCTAGATTTGGAGATTTGGGTATGAGAGACAGAGTATTATTGAGGGATTCTTCAATGATTTCAAGTGATGTTAAAGAGGAAAGAAGGAGGCAGCTCTGGCTTCCAATTGCCAGAAGAACTGTTCAATGGTTGGCAAATAGAGAGAGAACTCAGCCATTTAATGTATAG 1281 0.4005 MNQLGLPLLFLLFFHVTAQQQMNDSSPSADAVESFQPSLAVVIGILCLMFSLTFILLLYAKFCQRRASAHVDPENNHPELARSRSRRFSGIDKTVIESLPFFRFSSLKGFKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVSSDDPTMLTYSNSLRLLTNQSENNGEDPNIEIFVQREEDQRYGPSSSSFSSRFRIGSSFRKSGKGIAIKEEELPIQEEESEHDDGDGKLFHKHNHKITVSDVVFKHRWSNVSSSDLMFLNSEMIMNSAHSKRFDFSEPNGEKIQASTSGENGHIINIKEEMERKISFETKVGALNSVLDSSECVGTSSSSHTSKHVNPGDKRSMSEITGVARFGDLGMRDRVLLRDSSMISSDVKEERRRQLWLPIARRTVQWLANRERTQPFNV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1960 426 SMART ring_2 116 157 IPR001841 -
Mibi02g1960 426 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Mibi02g1960 426 CDD RING-H2_PA-TM-RING 115 158 - -
Mibi02g1960 426 SUPERFAMILY RING/U-box 95 164 - -
Mibi02g1960 426 Pfam Ring finger domain 115 158 IPR001841 -
Mibi02g1960 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 166 IPR013083 -
Mibi02g1960 426 FunFam RING-H2 finger protein ATL43 91 165 - -
Mibi02g1960 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 420 - -
Mibi02g1960 426 MobiDBLite consensus disorder prediction 343 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1960 Mibi-ChrMibi02 20772545 20773825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1960 8 426 C3H Transcription Factor Family AT4G28890 45.909 1.31e-106 320