Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1906 ATGATGCTCGGAGAACCCCATCACGCAAATCCAACGGTCCACATTCCACCATGGCCGGTCATCGATGATCCAACGCCGGAGATGTACTCTCCATACTCCTCCATGGCCTCCATGTCTGTAAGCTCCGACGGCAATGCCGGCGCCGGCTCCGGCGACTACTCTCCGTACTACCTGCAAGAAGCACTGACGGCGCTCCAGCGTTATCTGCCGTCGAACGATTCCGGCGACATCGACTCCGATTCCGAAGCCTTCGCTCGAGATTTGGATTCTCCGGTGGATGCATACTCATGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGCCGATCACATGACTGGACTGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGGAGGGACCCTCGGAAGTATCACTATTCAGGAACTGCATGCCCTGATTTCCGCAAAGGAAATTGCAAGAAAGGAGATGCATGCGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTATCGCACTCAGCCGTGCAAGGACGGCACTGGTTGTCGCCGACGAGTCTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTCTTCCTCAGCAGAGCCCGAGGAGTGTTAATTCCGTTGATTCCTATGATGGATCTCCTCTCAGGCAAGCGATTGAGTCTTCCTGTGTAAAATCGCTTCCGTTTTTGTCTTCTCCTGGTTCGATTTCCCCTCCGGCGACGCCTCCGACGGAATCTCCGCCGATGTCGCCGATGACTCAATCTCTGAGCCGCTCTCTTGGCTCGAATTCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATTTACAGTTTGGGAAGGTGAAGTCATTTCCCGCTTCTAGGAATGTTCCAGTAGGGTCTCCTCGTTTCGGATCTCCACGTGGATCGGTGCTTCGTCCTGATTTCTGTAGCCTTCCTTCGACTCCTACTGACGCACCGGCTCGTTCTGGTGCGAACTGTTTTGATCTTTGGGAACAGAGTACTGAGGAGGAGCCTGCTATGGAAAGGGTGGAATCTGGGAGGGACATAAGGGCGAAGATGTTTGCAAAACTTAGCAAAGAGAATTCTCTGGATGGATCGGGTGCAAGCACATCTGGTGGAGCTCCTGATGTTGGTTGGGTTTCAGAGCTGGTTAAGTGA 1185 0.5392 MMLGEPHHANPTVHIPPWPVIDDPTPEMYSPYSSMASMSVSSDGNAGAGSGDYSPYYLQEALTALQRYLPSNDSGDIDSDSEAFARDLDSPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTGCRRRVCFFAHTPEQLRVLPQQSPRSVNSVDSYDGSPLRQAIESSCVKSLPFLSSPGSISPPATPPTESPPMSPMTQSLSRSLGSNSSSINEMVASLRNLQFGKVKSFPASRNVPVGSPRFGSPRGSVLRPDFCSLPSTPTDAPARSGANCFDLWEQSTEEEPAMERVESGRDIRAKMFAKLSKENSLDGSGASTSGGAPDVGWVSELVK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1906 394 MobiDBLite consensus disorder prediction 257 271 - -
Mibi02g1906 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 164 IPR000571 GO:0046872
Mibi02g1906 394 ProSiteProfiles Zinc finger C3H1-type profile. 140 166 IPR000571 GO:0046872
Mibi02g1906 394 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Mibi02g1906 394 Gene3D - 139 203 - -
Mibi02g1906 394 MobiDBLite consensus disorder prediction 240 271 - -
Mibi02g1906 394 SMART c3hfinal6 174 197 IPR000571 GO:0046872
Mibi02g1906 394 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Mibi02g1906 394 MobiDBLite consensus disorder prediction 242 256 - -
Mibi02g1906 394 PANTHER UNKEMPT FAMILY MEMBER 14 394 IPR045234 -
Mibi02g1906 394 MobiDBLite consensus disorder prediction 369 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1906 Mibi-ChrMibi02 20074394 20075578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1906 95 299 C2H2 Transcription Factor Family AT5G12850 50.000 2.00e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g1906 zf-CCCH 3.9e-06 CL0537