Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1881 ATGGACTTAACCTCCACCGCAATCATCAACAACAACAACACTACTTCCGGCACCAAATCCCCAGAACAACAAGACCCGGAAATTCAAACCCGGATCCAACCCGTCACGGTCAAACCCTTGTCCTTCTCCAACGGCGTCCTCAAACGCCACCCCAAAAACCCGCCGGCGCCGCCGCCGCCAGCGGCCATTTCCTACAAAGAATGCCTGAAAAACCACGCGGCCACCCTCGGCGGCCACGCCCTTGACGGCTGTGGCGAGTTCATGCCCTCCCCCACCTCCAATTCCGCCGACCCCACCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAGGCCGATGAGCCCATATCCACCGCCACGCATGTCATCGAGTATCAGCCCCACCATCGGCACCACCCTCCGCCTCCGCCGCCCCCTCCGCTATCGAATCGAAGCCCGAATTCGGCTTCGCCGCCTCCGATCTCGTCCTCGTACTATCCGTCGGCGCCGCATATGCTCCTCGCACTCTCAGCGGGGCTGTCGGCCCATCCGGAGAGCACGGCGGTTCCGCCGCCGGGTGGCGGGAATTGTTCGAGGAAGCGGTTCAGGACTAAGTTCACGCAGGAGCAGAAGGATAGAATGTATGAATTTGCTGAGAGGGTTGGGTGGAAGATGCAGAAGAGGGATGATGAATTGGTTCATGAGTTTTGCCATGAGGTTGGGGTTGATAGGAGTGTTTTGAAGGTTTGGATGCACAATAATAAGAACACTTTGGGGAAGAAATTGGATGGTGTCATGAATGGGAATAGGAATGGTCTTGAGCTTGACCCGAATAACAGTCATGACCATGAAATCGCCGCCGGCAACAACAACGGTAGTGCCCAGGATCCCAATCATCAGTACCAGAATGATGGTGGGCCAAACGCTGCTACTAATGGCTCCTCTTCATCTTCTTAA 951 0.5657 MDLTSTAIINNNNTTSGTKSPEQQDPEIQTRIQPVTVKPLSFSNGVLKRHPKNPPAPPPPAAISYKECLKNHAATLGGHALDGCGEFMPSPTSNSADPTSIKCAACGCHRNFHRREADEPISTATHVIEYQPHHRHHPPPPPPPPLSNRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPESTAVPPPGGGNCSRKRFRTKFTQEQKDRMYEFAERVGWKMQKRDDELVHEFCHEVGVDRSVLKVWMHNNKNTLGKKLDGVMNGNRNGLELDPNNSHDHEIAAGNNNGSAQDPNHQYQNDGGPNAATNGSSSSS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1881 316 MobiDBLite consensus disorder prediction 259 316 - -
Mibi02g1881 316 MobiDBLite consensus disorder prediction 1 33 - -
Mibi02g1881 316 SUPERFAMILY Homeodomain-like 186 258 IPR009057 -
Mibi02g1881 316 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
Mibi02g1881 316 MobiDBLite consensus disorder prediction 281 316 - -
Mibi02g1881 316 FunFam Zinc-finger homeodomain protein 2 190 258 - -
Mibi02g1881 316 Gene3D - 188 257 - -
Mibi02g1881 316 MobiDBLite consensus disorder prediction 131 162 - -
Mibi02g1881 316 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Mibi02g1881 316 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Mibi02g1881 316 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
Mibi02g1881 316 MobiDBLite consensus disorder prediction 137 152 - -
Mibi02g1881 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1881 Mibi-ChrMibi02 19827700 19828650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1881 1 253 ZF-HD Transcription Factor Family AT5G15210 54.475 4.11e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mibi02g1881 ZF-HD_dimer 7.8e-28 No_clan