Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1823 ATGTTAGTGAAACAGGTCCTTCAGAACCAAACAGAAAAATATGAAAAGTTGCTGACGTTGGTGTTAGACTTCGGTAATCAAAGGATAGACCCTGCTGAATTCATAGAAAGGCTGAAGAAACTACTCGAAGGGCATAGGGATTTGCTTTTTGGATTTAATGCCCTCTTGCCCGAAGGCTATAAGATAAATCCTGATGATGATGAGTGTGGAGCTAGCCCTCCAATGAAAGTGGTGCACTATGATGAAGCTCTGGATTTTGTACACAAGATAAAGGAACGATTTCAAAATGATGAGCAAGTGTACCTATCATTCAATGATGCTTTGCGTATGTTCCGCCATGGGAGCAAAGATATGACTGAGGTCTATATGGAGTATACGGAGCAGGTTGAGGAAAGTAGAAAAAGGAGAGTTCATGATCGGAATGAGAGAGAGCCTGATCTTTCTAACAATAGGGGCTTAAAATGTGTTTCTAATAAAAGGAAATCTGTCAAGAAGGCTGAAGCTCTTAGGCTGACTGCTGACTGTCCTGATGACAACAAAGATACCTTAAAGGTTGGGGAGAGGCTGGACAAATCAGATGACTACCGGACATTCTTAGAGTACTTCCAAATGCGCAAAAGTGGAACAATAACTATGGATGAATTAAATGGTCTGGTTTTCAATTTACTTGGAAATTTTACTGATCTTATGGAAGAATACGATGATTTCGCTAGAGGATCATTTGATAGAGACCAGAAGCGTGATGTGAATGTGTCTAAAGAGAGGGACGAAAACCATGAGAAATACACGTGGAAATCATTTCGTGAACTTGACCTCCGTGATTGTGAATGTTGTGGTGCCAGCTACCGGCGTGTTCCTGACGATGTACATCATCCAATTCCTATTACTAGTGGGAGATCTGAGCTTGATGCTGAAGTATTGAATGATCACTGGAATCCTACTGTTGCTTTGCCTGTGTTGTCAAGTCGACTCGAGCAGAAACAGGAGGAGTGGATAAAGTTTCGTTTAGAATTCAACAAGGTCTGGGCTGAAGATTATGCTGAAAACTTCAACAAATCACTTGATTATCGTAGCCTCCAGTTCAAGCGACAAGATTCAAAGAACTTGAAACCAAAAACTTTGGTAGCTGAGATAAAAAAAATCAAAGAGAAGCAGCAGGAACATGAGTGGCTTCAGGCCACTGCTGCTGGAAATAAACTATCTCCAATTCCACATATGCAATTTGAATATTCAGATCTTGAAATTCATGAAGACCTACATAAACTTGTTTGTTATGCATGTAAAGGGATCGTTACTAGTGAGGGATTGTTGAATAAAATGTTGAGAGTATGGACAACCTTCTTGGAGCCCATGCTCGGTGTTCCTTCCCGGTCTGTTGATGGTGATCGCCCTTGTAATGATGCACAAGGTGATCATGACTCTGTGGCCAAGTCACAAAGTGGTGATGTATCTATGGTGGAGCGTTGTGACAAGGCAACTGCAACTTCTCTGGCCAATGGAGTTCTACTTCAAGAAAATAACCAAGAAGAATTTGCTGGGCATTTCCAAATTGAAAGGGAAGAGGGTGAAATATCTCCCCAAATTGAAAGGGAAGAGGGTGAAATATCTCCCTCACAAGATGGTGACTATGAAGAGGATAACTGTGTTGACAATGGAGATGCCAACATGCAGGTAACGCCCAGCTCAGAACTCCATGCAAGAAGTAAATATCAATCAAGAAATGGGGTCGGGATTCACAACGAGGCAGATGTTGATGTTAAAGCTGAAGTTGAGAGAACGTATAATGCACAATCTGCTTCTGATGGCTCATTGTTGGAAAGGTCTTTTTTGTCTGCGAAACCTCTTACTAAATATATATCACCACCAGTTTTACTAGAAGAAAGAAGAGAATCCAGGGTCATATATGGAAATGATGACTTCTATGTGCTTTTCAGGCTTCATCATATTCTGTATGAGAGGATCTTATTAGCGAAATCAAAGTCGATGAGTTCTGAAATGAAGCGTAGATTTGCAAAGGATGCTGATTCTCCAGACCCATATTCAAGATTTTTGGATGCACTTTACAACTGCCTTGGTGGATCTATTAACAATGCAAAGTTTGAAGATGAGTGCCAAGCAATTATTGGAAACCAGTCATACAAGTTATTCACGTTGCACGAATTAATTCATAAATTGGTTAAACAGCTTCAAGTGGTTGCAAAAGTTGAAACAAATAATAATCTTCTTCAGTTCTTTGAGTATGAAAATTCTCGAAAACCTGAGAGGCTGACTCATTCAGGGAACAAACGCAAATATGGTGCTTCAGATGAGTTTCCAGATATGGAGGGTGTTTTAGTAATTAATAAATTGGACCATGAGATAATTTGCAACTCATCAAAGGTGTGTGATTACTTTTCTATGCTTGGTGTTCAACTTTGA 2418 0.4012 MLVKQVLQNQTEKYEKLLTLVLDFGNQRIDPAEFIERLKKLLEGHRDLLFGFNALLPEGYKINPDDDECGASPPMKVVHYDEALDFVHKIKERFQNDEQVYLSFNDALRMFRHGSKDMTEVYMEYTEQVEESRKRRVHDRNEREPDLSNNRGLKCVSNKRKSVKKAEALRLTADCPDDNKDTLKVGERLDKSDDYRTFLEYFQMRKSGTITMDELNGLVFNLLGNFTDLMEEYDDFARGSFDRDQKRDVNVSKERDENHEKYTWKSFRELDLRDCECCGASYRRVPDDVHHPIPITSGRSELDAEVLNDHWNPTVALPVLSSRLEQKQEEWIKFRLEFNKVWAEDYAENFNKSLDYRSLQFKRQDSKNLKPKTLVAEIKKIKEKQQEHEWLQATAAGNKLSPIPHMQFEYSDLEIHEDLHKLVCYACKGIVTSEGLLNKMLRVWTTFLEPMLGVPSRSVDGDRPCNDAQGDHDSVAKSQSGDVSMVERCDKATATSLANGVLLQENNQEEFAGHFQIEREEGEISPQIEREEGEISPSQDGDYEEDNCVDNGDANMQVTPSSELHARSKYQSRNGVGIHNEADVDVKAEVERTYNAQSASDGSLLERSFLSAKPLTKYISPPVLLEERRESRVIYGNDDFYVLFRLHHILYERILLAKSKSMSSEMKRRFAKDADSPDPYSRFLDALYNCLGGSINNAKFEDECQAIIGNQSYKLFTLHELIHKLVKQLQVVAKVETNNNLLQFFEYENSRKPERLTHSGNKRKYGASDEFPDMEGVLVINKLDHEIICNSSKVCDYFSMLGVQL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1823 805 ProSiteProfiles PAH domain profile. 1 59 IPR003822 GO:0006355
Mibi02g1823 805 Pfam C-terminal domain of Sin3a protein 635 763 IPR031693 -
Mibi02g1823 805 Gene3D Paired amphipathic helix 182 238 IPR036600 GO:0006355
Mibi02g1823 805 SMART hdac_interact2seq4b 274 364 IPR013194 -
Mibi02g1823 805 PANTHER SIN3B-RELATED 3 311 IPR039774 GO:0003714
Mibi02g1823 805 SUPERFAMILY PAH2 domain 78 125 IPR036600 GO:0006355
Mibi02g1823 805 MobiDBLite consensus disorder prediction 132 153 - -
Mibi02g1823 805 Gene3D Paired amphipathic helix 75 150 IPR036600 GO:0006355
Mibi02g1823 805 SUPERFAMILY PAH2 domain 3 60 IPR036600 GO:0006355
Mibi02g1823 805 ProSiteProfiles PAH domain profile. 76 147 IPR003822 GO:0006355
Mibi02g1823 805 SUPERFAMILY PAH2 domain 189 237 IPR036600 GO:0006355
Mibi02g1823 805 MobiDBLite consensus disorder prediction 132 149 - -
Mibi02g1823 805 MobiDBLite consensus disorder prediction 519 537 - -
Mibi02g1823 805 MobiDBLite consensus disorder prediction 519 542 - -
Mibi02g1823 805 Gene3D Paired amphipathic helix 1 57 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1823 Mibi-ChrMibi02 18907652 18915332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1823 11 67 WRKY Transcription Factor Family AT4G12020 44.068 1.05e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi02g1823 Sin3a_C 6.3e-27 No_clan