Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1821 ATGTCTTCGCCTGCCCCTCAAGATTCTGATTCCATCCCACATATTTACTCCCGGAAAGACAAGTCACTCGGAGTAATTTGCTCTAACTTCCTCAAGCTTTATAATCGCGAAGGTGTTGGGACCATTGGACTTGACGATGCCGCTTCCCGACTAGGAGTTCAGCGTCGCCGAATGTATGATGTGGTCAACATATTGGAGAGTGTTGGAATTGTGGCAAGAAAAGGGAAAAATCTATACATATGGAAAGGTTTCAGAGAAATTCCTCGAGTTTTGAACGAACTTAAGGATGAGGGTATGAGAGAAAAATTTGATGCAGCCTCCTGCAGGTCAGCTGAAGCGTCAAAGAACAACAAAACCAGTGGGTCTGAAACTAAAACTGATCCTTTGGCATTGGAATTGCCCAAAACTGACAGCTGCAGAAGAGACAAATCTATGGCACTTTTAACAGAGAATTTCATTAAGCTCTTCCTCTGTTCAGATGTTGAAATTATCTTGCTTGAAGATGCTGCAAAGATAATGCCGGGTGATGCCCAGAATTCTACTGCCTTGAGAACAAAAGTCAGACGTTTATATGACATAGCGAATGTCCTATCATCTATCAATCTGATCGAGAAGACAAATCATCCTGAGCATAGGAAAACAGCGTACAGGTGGTTGGGAGGGAAGGCCAATAAAGAATCTGATGGCATCTTGGATCAAAGTGCATCTAGGAAGAGAGTGTTTGGAGCAGAAATTACAAATTACAGTTTAAAGAGAAGCAGAACAGATTCTTCAATGGGTTCACAGTCCCAAGAAAGGATTATGCCGGTGTATGAAAAACAAGACGAGTTGGAAAATGAATACAGTTGTAAAACATTGGAGCACCCCCCTAAATGCAGTTCAAAGGCCATAGACTTTGGCCCTTTCGCTCCAGTCAAGTTTAGAAGGGAAGATTCAGAGCACAGACATATTTGA 954 0.4235 MSSPAPQDSDSIPHIYSRKDKSLGVICSNFLKLYNREGVGTIGLDDAASRLGVQRRRMYDVVNILESVGIVARKGKNLYIWKGFREIPRVLNELKDEGMREKFDAASCRSAEASKNNKTSGSETKTDPLALELPKTDSCRRDKSMALLTENFIKLFLCSDVEIILLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPEHRKTAYRWLGGKANKESDGILDQSASRKRVFGAEITNYSLKRSRTDSSMGSQSQERIMPVYEKQDELENEYSCKTLEHPPKCSSKAIDFGPFAPVKFRREDSEHRHI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1821 317 Pfam E2F/DP family winged-helix DNA-binding domain 142 220 IPR003316 GO:0005667|GO:0006355
Mibi02g1821 317 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Mibi02g1821 317 PANTHER TRANSCRIPTION FACTOR E2F 9 283 IPR015633 GO:0000978|GO:0006357
Mibi02g1821 317 SUPERFAMILY "Winged helix" DNA-binding domain 142 220 IPR036390 -
Mibi02g1821 317 FunFam E2F transcription factor 8 13 85 - -
Mibi02g1821 317 Gene3D - 134 222 IPR036388 -
Mibi02g1821 317 Gene3D - 12 85 IPR036388 -
Mibi02g1821 317 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Mibi02g1821 317 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Mibi02g1821 317 SMART E2F_TDP_2 140 220 IPR003316 GO:0005667|GO:0006355
Mibi02g1821 317 FunFam E2F transcription factor-like E2FE 135 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1821 Mibi-ChrMibi02 18896670 18898842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1821 7 305 E2F-DP Transcription Factor Family AT3G01330 50.489 6.32e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mibi02g1821 E2F_TDP 1.1e-17 CL0123