Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1820 ATGTTGCAAGCAATAGTTTCACTCCCTAACTTCTTTGATGCTAAGATGAAGACGACGTACGACTCCAATGGTCAATCGCATGACCATGGAGGAGTGGGAGATGGCGATGGTAATATAAGAGGGAAAGGAGGAGCTGCTTTGCAGAATTTGACTAAGGACCGTGCCACCTTATCCTATTCTAAGTTAATTAAACAGACATTTCAGAACCAAACAGAAAAATATGATAGTTTCATGGAGTTCTTGATGGATTTCAAGGCTCGAAGGATAGACCCGGCTGGATTCATAGAAAGGGTGAAGGAACTATTCAAAGGGCATAGGGATTTGATTTCTGGCTTAAATGCCTTATTGCCTGAAGGCTGTGAGATAACGCTTGATGAGTGTGGAGCTAGCCCTCCAAAGAAAGAGGTTGAGTATGATGAAGCTCTGGATTTTACACACAAGATAAAGGAACGATTTCAACATGATGATCACGTATACCTATCATTCTGTGATGCTTTGCGAATGTTCCGCAATGGGAGCAAAGATGTAACTGAGGTCTACAATGAGTCCCAGAGCATTAATTCACCTAAGCTGGATGTTGGCAAAGCAATGATTAAAGAGCACAAGAAGCATACTAAGCAGGTTGAGGAAAGTAGGAATATGAAAGTTCATGATCAGAATGAGAGAAAACCTGATATTTCGAACAACATGGGCTTAGAATGTGTTCCTGACAAGAAAAAATCTGTCAAGAAGGCTGAAGCTCCTATGCCGACTGCTGACTTTACGTATGATAGCATAGATACCTTAAAGGGGAGAGAGAGGGAAGAAAACTATGAGACATACATGGGGTTATCAATTCATGAACTTGACCTCCGTGATTGTGAATGTTGTAATGTCAGCTACCGGCGTTATCCAATTCCTATGTCTAGTCAGAGATCTAAGCTTGGTGCTGAAGTATTGAATGATCACCGGGTATCTGTAACTTCAGGAAGTCTACATTTAAGATGCATTGAGCATCTGTATGGTGACTTTGGCCTTGAAGCTGTAGAGGCATTACGTCAGAATCCTACAGTTGCTTTGCCTGTGATGTTAAGACGACTCAAACTGAAACAGAAGGAGTGGAGGAAGTGTCGTGCAGAATTCAACATGTTTTGTGCAGGAGCTACGAACTCCTACAAATCGCTTGATTATTGCAGCTTCTATTTCAGGCAACAAGATTCGAAGAACTTGAACCCAAAATCTTTGGTAGCTGAGATTAGAGATATCAAAGAGAAGCAGCAGGAACATGAGTGGCTTCAGGCCACTGCTGCTGGAAATAAACTATCTCCAATTCCACATATGCAATTTGAATATTCAGATGTTGAAATTCATGAAGACCTCCATAAACTTGTTTGTTATGCATGTAAAGAGATCGTTACAAGTGAGGGATTGTTAAATAAAATGTTGAGAGTCTGGACAACCTTCTTGGAGCCCATGCTCGGTGTTCCTTCCCAGTCTGTTGATGGTGATTGCCCTTGTTATGATGCACAAGGTGATCATGACTCTGTAGCCAAGTCTCAAAGTGGTGATGTATCTATGGTGCAGGGTTGTGACATAGCAACTCCAGATTCTCTGGCCAATGAAGTTCTAATTCAAGGAAATAACCAAGAAGAATTCGCTGGGCATTGCCAAATTGAAAGAGAAGTGGGTGAAATATCTTCCTCACTAGATGGTGACTATGAAGAGGATAACTGTGTTGACAATGGAGATGCCAACACGCAGGAAACGCCCAGCTTAGAACTCCATGCAACAAGTAAATACCAATCAAGAAATGGGATTGGGATTCATAACGAGGCAGGTGTTGATGATAAAGCTGAAGTTGAGAGAAAGTGGAATGCACAATCTGCTTCACATGGCTCCTTGTTGGAAAGGTCTTTTTTGTCTGCAAAACCTCTTACTAAATATATATCACCGCCAGTTTTACTAGAAGAAAGAAGAGAATCCAGGGTCATCTATGGAAATGATGACCTCTATGTGCTTTTCAGGCTTCATCATGTAAGGACAGACCCATATTCAAGATTTATGGATGCACTTTACAACTTTCTTGGTGGATTTGTTGACAATGCAAAGTTTGAAGATGAGTGCCAAGCAATTATTGGAAACCAGTCATACAAGTTATTCACGTTGCACGGATTGATCCATAAATTGATTAAACAGCTTCAAGTGGTTGCAAATGTTGAAACAAATAATAATCTTCTTCAGTTGTTTGAGTATGAAAATTCTCGGAAACCTGAGAGGCTTACTCATTCAGGGTATCTTGCGAATGCACGTGTGATCCTCCCCGAGGAGAATATATATCGCCTGGAATGTTCATATGGCCCTTCCAAACTATTCATCTGGCTAATGGATCGCTCAGATGAAATGCCAATGGGGTTTAACCTTGATCCAAATTGTGCTGATTATCTTTACAATGATTTTCTATCAGTCTTTCCTGATAAAGAGGGACGCCATGACTTTATGCTACAAAGGAACAAACGCAAACATGGTGCTTCAGATGAGTTTTCAGATTTGGAGGGTGTTATAGTAATTAACAAATTGGACCATGTGATAACTTGCAACTCATCCAAGATTAGGTATCGTGCGTTCACAGAAGATGTGTTTTATCGTCGCCGAAAGAAGCGAAAGACATCATCCAAACATAACGAAGGCAGAGTAGAGAGATTCCACAGGTTTTTATCAAATTGTAAGGGAACAGCTCCAAGGTAA 2724 0.409 MLQAIVSLPNFFDAKMKTTYDSNGQSHDHGGVGDGDGNIRGKGGAALQNLTKDRATLSYSKLIKQTFQNQTEKYDSFMEFLMDFKARRIDPAGFIERVKELFKGHRDLISGLNALLPEGCEITLDECGASPPKKEVEYDEALDFTHKIKERFQHDDHVYLSFCDALRMFRNGSKDVTEVYNESQSINSPKLDVGKAMIKEHKKHTKQVEESRNMKVHDQNERKPDISNNMGLECVPDKKKSVKKAEAPMPTADFTYDSIDTLKGREREENYETYMGLSIHELDLRDCECCNVSYRRYPIPMSSQRSKLGAEVLNDHRVSVTSGSLHLRCIEHLYGDFGLEAVEALRQNPTVALPVMLRRLKLKQKEWRKCRAEFNMFCAGATNSYKSLDYCSFYFRQQDSKNLNPKSLVAEIRDIKEKQQEHEWLQATAAGNKLSPIPHMQFEYSDVEIHEDLHKLVCYACKEIVTSEGLLNKMLRVWTTFLEPMLGVPSQSVDGDCPCYDAQGDHDSVAKSQSGDVSMVQGCDIATPDSLANEVLIQGNNQEEFAGHCQIEREVGEISSSLDGDYEEDNCVDNGDANTQETPSLELHATSKYQSRNGIGIHNEAGVDDKAEVERKWNAQSASHGSLLERSFLSAKPLTKYISPPVLLEERRESRVIYGNDDLYVLFRLHHVRTDPYSRFMDALYNFLGGFVDNAKFEDECQAIIGNQSYKLFTLHGLIHKLIKQLQVVANVETNNNLLQLFEYENSRKPERLTHSGYLANARVILPEENIYRLECSYGPSKLFIWLMDRSDEMPMGFNLDPNCADYLYNDFLSVFPDKEGRHDFMLQRNKRKHGASDEFSDLEGVIVINKLDHVITCNSSKIRYRAFTEDVFYRRRKKRKTSSKHNEGRVERFHRFLSNCKGTAPR 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1820 907 MobiDBLite consensus disorder prediction 203 224 - -
Mibi02g1820 907 FunFam Paired amphipathic helix protein Sin3 55 117 - -
Mibi02g1820 907 Gene3D Paired amphipathic helix 56 117 IPR036600 GO:0006355
Mibi02g1820 907 Pfam C-terminal domain of Sin3a protein 674 873 IPR031693 -
Mibi02g1820 907 SUPERFAMILY PAH2 domain 57 117 IPR036600 GO:0006355
Mibi02g1820 907 SUPERFAMILY PAH2 domain 131 183 IPR036600 GO:0006355
Mibi02g1820 907 MobiDBLite consensus disorder prediction 203 233 - -
Mibi02g1820 907 Pfam Paired amphipathic helix repeat 72 114 IPR003822 GO:0006355
Mibi02g1820 907 ProSiteProfiles PAH domain profile. 48 119 IPR003822 GO:0006355
Mibi02g1820 907 PANTHER SIN3B-RELATED 50 743 IPR039774 GO:0003714
Mibi02g1820 907 Gene3D Paired amphipathic helix 133 219 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1820 Mibi-ChrMibi02 18882438 18890263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1820 43 124 WRKY Transcription Factor Family AT4G12020 42.683 4.99e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi02g1820 Sin3a_C 6.7e-31 No_clan