Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1807 ATGGAGTTGTACGGTCGGAATCCGGCTAGGAATGGGTCGCAACCTGGTAATCAATCTGAATGGCAACCGTCAGGTGGTGAAACTGGGCTTGAAGAATCGATGTGGCATTTATCCATCGGTGGTGGTGAATCTTACCCTGAGCGGCTTGGGGCACCCAATTGTGTGTATTACATGCGAACTGGGTTCTGTGGATACGGTAGCAGGTGTCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAATGGGGGAACCTTCATGTCAGTATTATTTAAAAACCGGAACCTGCAAATTTGGTGCATCTTGTAGATTTAACCATCCAAAACACGGAGGTGGATCATTGAGTCAAGCTCCACTAAATATTTATGGATTCCCGTTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACAGGGCAGTGCAAATTTGGTATGACTTGTAAATTCCACCATCCTCAACCAGCTGGCACATCAATGCCAACATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCCACGGTCCCTCTAGCTGAACAGTATGGCGGGGCATCCAATAGTTTGAGGGTGGCTAGGCCTTCAATGTTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCCGTCCTTCTCTCTCCTGGGGTTGTTCCCTTTCCAGGGTGGAGTCCTTATACGGCACCTGTGAGTCCTGTGCTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGGGTGACCCAGTTGTCTTCGTCAACATCAGCTTTTGCCAGACCATATACTCCTCTTCCATCTACTACTGGCCTTTCAGGCAGTGCCCTGAAGGAACAGATATTTCCTGAAAGACCTGGTGAACCTGAATGTCAATACTATCTGAGAACAGGGGATTGCAAATATGGGTCAGCATGTCGATACCATCATCCCAGGGACCGGACTGTGACTCGTCCACTACTCAGCCCCATCGGTCTTCCTTTACGTTCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCCACTTGCAAATTTGACCATCCTTTGGGGTCCGTGAGATACAGTCCTTCAGCATCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACGACATCCTCAGAGCTTCGGCCTGAACTAATGTCAGGCTCAAAAGTGGAATCTTTTGCTACTAGAATGCCATCTTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACTGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAAACTGCTACTCCTTTAAGCAGTAGCAGAAGCACTAGACAGAGTGGCGACATACGATGA 1416 0.4852 MELYGRNPARNGSQPGNQSEWQPSGGETGLEESMWHLSIGGGESYPERLGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERMGEPSCQYYLKTGTCKFGASCRFNHPKHGGGSLSQAPLNIYGFPLRPGEKECSYYLKTGQCKFGMTCKFHHPQPAGTSMPTSAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSMLPGSYVQGAYGPVLLSPGVVPFPGWSPYTAPVSPVLSPGAQSAVGATSLYGVTQLSSSTSAFARPYTPLPSTTGLSGSALKEQIFPERPGEPECQYYLRTGDCKYGSACRYHHPRDRTVTRPLLSPIGLPLRSGVQPCVFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGSKVESFATRMPSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQTATPLSSSRSTRQSGDIR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1807 471 Gene3D - 45 126 - -
Mibi02g1807 471 Gene3D - 295 377 - -
Mibi02g1807 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Mibi02g1807 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Mibi02g1807 471 MobiDBLite consensus disorder prediction 417 433 - -
Mibi02g1807 471 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Mibi02g1807 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Mibi02g1807 471 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Mibi02g1807 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Mibi02g1807 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Mibi02g1807 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Mibi02g1807 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Mibi02g1807 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Mibi02g1807 471 MobiDBLite consensus disorder prediction 1 27 - -
Mibi02g1807 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 366 IPR000571 GO:0046872
Mibi02g1807 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Mibi02g1807 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Mibi02g1807 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Mibi02g1807 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Mibi02g1807 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Mibi02g1807 471 MobiDBLite consensus disorder prediction 398 433 - -
Mibi02g1807 471 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Mibi02g1807 471 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Mibi02g1807 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Mibi02g1807 471 MobiDBLite consensus disorder prediction 448 471 - -
Mibi02g1807 471 PANTHER PROTEIN PHOSPHATASE RELATED 19 380 - -
Mibi02g1807 471 MobiDBLite consensus disorder prediction 10 26 - -
Mibi02g1807 471 Gene3D - 127 173 - -
Mibi02g1807 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1807 Mibi-ChrMibi02 18755322 18759950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1807 1 420 C2H2 Transcription Factor Family AT5G18550 52.500 1.32e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g1807 zf-CCCH 7.4e-08 CL0537