Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1805 ATGTGGCATTTGACCATCGGTGGCAATGAATCTTATCCTGAGAGACCCGGCGTATCTATTTGCGTGTATTATATGCGAACTGGGTTCTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCTGAACGAGTGGGGGAGCCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGCGCATCCTGTAAATTTCACCATCCAAAACACGCAGGTGGATCATTAAGTCAAGCTCCACTAAATATTTATGGACACCCATTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTCGGTAGAACTTGTAAATTCCATCATCCTCAACCAGCTGGCGCATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACGGTCCCTCTAGCTGAACAGTATGGGGCAGCATCTAACAGTTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTTCTTTCTCCAGGTGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCTTCTGTGAGTCCTGTGTTATCTCCTGGTGCTCAGTCTGCTGTTGGAGCTACTTCTCTGTACGGAGTGACCCAGTTGTCTCCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTACTACTAGCCTTTCAGGCATTGGCCTGAAGGAACAAATATTTCCTGAAAGACCTGGAGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCTTGTCGATTTCATCATCCCAGGGACTGGACTGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGTAAGTTTGGCTCCACTTGCAAATTTGACCATCCTTTGGTCTCTGTGAGATACAGTCCCTCAGCATCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGGTCCTTGCTGTCTACCCTGGCTCCTTCAACAGCATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTATTCTACTAGAATGCCTTCATCTGGAAATGGTTCAAGCAGTTCTGTCGGTTTAATTTTCTCCCAAGGTGGAACTGTCTCTCTTTCTGATGTGCAAATCTCAAGTCAAAGCACAACTCCTTTAGGCAGTAGCAGAATCACAAGACAAAGTGGTGACTTGCGATGA 1317 0.4746 MWHLTIGGNESYPERPGVSICVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHAGGSLSQAPLNIYGHPLRPGEKECSYYLKTGQCKFGRTCKFHHPQPAGASMPASAPQFYQQVQSPTVPLAEQYGAASNSLRVARPSILPGSYVQGAYGPVLLSPGVVPFPGWSPYTASVSPVLSPGAQSAVGATSLYGVTQLSPSTSAFARPYTPLPSTTSLSGIGLKEQIFPERPGEPECQYYLRTGDCKYGLACRFHHPRDWTVTRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTASSELRPELMSGSEVESYSTRMPSSGNGSSSSVGLIFSQGGTVSLSDVQISSQSTTPLGSSRITRQSGDLR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1805 438 Gene3D - 94 141 - -
Mibi02g1805 438 SUPERFAMILY CCCH zinc finger 309 334 IPR036855 GO:0046872
Mibi02g1805 438 SMART c3hfinal6 60 87 IPR000571 GO:0046872
Mibi02g1805 438 SMART c3hfinal6 106 133 IPR000571 GO:0046872
Mibi02g1805 438 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Mibi02g1805 438 SMART c3hfinal6 15 42 IPR000571 GO:0046872
Mibi02g1805 438 SMART c3hfinal6 263 290 IPR000571 GO:0046872
Mibi02g1805 438 ProSiteProfiles Zinc finger C3H1-type profile. 106 134 IPR000571 GO:0046872
Mibi02g1805 438 SUPERFAMILY CCCH zinc finger 64 88 IPR036855 GO:0046872
Mibi02g1805 438 PANTHER PROTEIN PHOSPHATASE RELATED 8 355 - -
Mibi02g1805 438 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Mibi02g1805 438 SUPERFAMILY CCCH zinc finger 108 134 IPR036855 GO:0046872
Mibi02g1805 438 MobiDBLite consensus disorder prediction 415 438 - -
Mibi02g1805 438 SUPERFAMILY CCCH zinc finger 17 44 IPR036855 GO:0046872
Mibi02g1805 438 ProSiteProfiles Zinc finger C3H1-type profile. 60 88 IPR000571 GO:0046872
Mibi02g1805 438 MobiDBLite consensus disorder prediction 370 400 - -
Mibi02g1805 438 Gene3D - 262 344 - -
Mibi02g1805 438 Gene3D - 14 93 - -
Mibi02g1805 438 SUPERFAMILY CCCH zinc finger 267 291 IPR036855 GO:0046872
Mibi02g1805 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 17 42 IPR000571 GO:0046872
Mibi02g1805 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 87 IPR000571 GO:0046872
Mibi02g1805 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 108 133 IPR000571 GO:0046872
Mibi02g1805 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 290 IPR000571 GO:0046872
Mibi02g1805 438 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 333 IPR000571 GO:0046872
Mibi02g1805 438 ProSiteProfiles Zinc finger C3H1-type profile. 15 43 IPR000571 GO:0046872
Mibi02g1805 438 ProSiteProfiles Zinc finger C3H1-type profile. 263 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1805 Mibi-ChrMibi02 18740278 18744596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1805 10 387 C2H2 Transcription Factor Family AT5G18550 54.061 1.49e-133 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g1805 zf-CCCH 4.8e-08 CL0537