Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1797 ATGGAAAAAGACCCTGCAACGCAAAACAGAGAGCAATTTGGAAGGTTGCAGTATGGATGCGAGCACTACAAGAGAAGGTGCAAAATCCGAGCTCCCTGCTGTGATCAAATCTTTCCATGTCGCCACTGCCACAACGAAGCCATGAGCTCGCTTGACAATTCCAAAGAGTGCCATGAACTGGTCAGGCGTGATGTTAAGCAGGTTATATGTTCAGTCTGTGATGTTGAGCAGGAGGTTGCAAAATTGTGTTCTAACTGTGGTGTCAATCTGGGAGAATATTATTGTGACATTTGCAAATTCTACGATGATGATACAGATAAAGGGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTCGGTGGTCGTGATAACTTCTTTCATTGTCAGAAATGTGGATCATGCTATGCAATGGACCTGAAAGATAAACACACATGTGTAGAGAACTCAATGAAGAGCCACTGCCCCGTCTGCTATGAGTACCTATTTGATTCAATTAAAGGCACCACAATTATGAAATGTGGACATACAATGCATATGGATTGCTTCCGAGAGATGGCAGCCCAAAATCAGTATCGTTGTCCTGTCTGCTCCAAGTCAATGTTCGATATGTCAGTGAATTGGACGGAACTAGATCGTGAGATTGAAGCTGTTCCGATGCCTGATGAGTACAAGACTGAGGTTTCGATTCTGTGCAATGATTGCAATACCACCAGCGCAGTGTCGTTCCACATTTTAGGTCACAAGTGCAGACAGTGTGGTTCGTACAACACCCGAAGGATTTCAGCAGTTGAACATCAATGA 804 0.4415 MEKDPATQNREQFGRLQYGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLDNSKECHELVRRDVKQVICSVCDVEQEVAKLCSNCGVNLGEYYCDICKFYDDDTDKGQFHCEECGICRVGGRDNFFHCQKCGSCYAMDLKDKHTCVENSMKSHCPVCYEYLFDSIKGTTIMKCGHTMHMDCFREMAAQNQYRCPVCSKSMFDMSVNWTELDREIEAVPMPDEYKTEVSILCNDCNTTSAVSFHILGHKCRQCGSYNTRRISAVEHQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1797 267 Gene3D - 225 267 - -
Mibi02g1797 267 Pfam Zinc-ribbon 202 259 IPR039512 -
Mibi02g1797 267 ProSiteProfiles Zinc finger CTCHY-type profile. 90 154 IPR017921 -
Mibi02g1797 267 Pfam CHY zinc finger 20 100 IPR008913 GO:0008270
Mibi02g1797 267 SUPERFAMILY CHY zinc finger-like 17 89 IPR037274 GO:0008270
Mibi02g1797 267 ProSiteProfiles Zinc finger RING-type profile. 155 198 IPR001841 -
Mibi02g1797 267 ProSiteProfiles Zinc finger CHY-type profile. 13 88 IPR008913 GO:0008270
Mibi02g1797 267 SMART ring_2 155 197 IPR001841 -
Mibi02g1797 267 Pfam Ring finger domain 154 197 IPR001841 -
Mibi02g1797 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 216 IPR013083 -
Mibi02g1797 267 SUPERFAMILY Zinc hairpin stack 91 148 IPR037275 -
Mibi02g1797 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 264 - -
Mibi02g1797 267 SUPERFAMILY RING/U-box 154 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1797 Mibi-ChrMibi02 18543206 18546360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1797 18 263 C2H2 Transcription Factor Family AT3G18290 42.688 2.14e-58 198