Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1779 ATGACTTATCGTTCTCATAAACCAATCTTCCTTTTCCAAACTCAGTGCCTGCCTCCCATGGAATCCAAACTCGGTGTGTCAATTGGCGATATTGCTAACCTTCCTCCCGATATTATCAAAGAAATTTTTTCTAGATTAGACGCCAAAACCCTATTTCATAGCTCATTTGTTTGCAAGGAATGGTATGACCTTATCACCAGCCCAGATTTCATGCTCCGAAGCTCAACCCATGATTCCAAAAGTGATCAAAGTCTCCTTATTAAAAATTGTCCTGGCCTTCATAGCCTTCGATTTTACCCTAAAAGGGACTATATTTATTTTCCAAATTGCCAGTTAATATATTCATTGCATTCGGACAACAATGAATTTGATCTATTTCACCAATGGAAGAATCCTACCATTGATGACTTCGAAGACACACATGTGATAGGGGTAAGCAATGGGTTGGTATGTCTTGCTAGTGGTAAGTCGTTGGAATTCATTCTTTGGAACCCAATTATCCAAAAATATGTATGCCTTCCCCTGATGGAGAGAACTTGGGATGAATATCTATGTTGTGTAGGCTTTGGTTTCGATCGTACCAACAACGACTTTAAGATTGTAAGCATAATTCATAATGATATTCCTGGGAAATTTAAGTTTGACTCAGTTTGGATTTTCTCATATGTCACATGGTCATGGAAGCGTCTCACATGTAGTGCTCTTTCTTGTCAATTTCTCGGGGATCCCTCAATATTATTCAATGGTATGCTTCATTGGTATGTTTCGTACGTGGAAGATAATGTGCATAAATATAATTTTATACTTACATTTGATCTAACACATGAAGTGTTTGGAGAAATATCAATCCCTGATATGGATGTCTTCCACCCTGAGTGCATCGACAAGTGGTTATCCACTAACACCACTTGCCCTGTCTATCGAGCAAACCTTGTCCCTCACCTTGACCAGCCCGTTCACCGACTTCCCGACATCGTTGACCTCGAAGCTCAAAAAGACGCCGTCGCCGTTGAACCCCAACCGGAGCCACAGCATACAGTGGAGGTTGATCCTGAACTGGCGGAGTCTGATGTTGTGTGCTTGTATCAGACGGAGAAACAGAACCGGACGCAAGTGTCTAGATTGAGCCGGGCGAGAAGGTTTCCTCGGTCGCACTCAACCGAGCATTCATTGGTCTGA 1179 0.4207 MTYRSHKPIFLFQTQCLPPMESKLGVSIGDIANLPPDIIKEIFSRLDAKTLFHSSFVCKEWYDLITSPDFMLRSSTHDSKSDQSLLIKNCPGLHSLRFYPKRDYIYFPNCQLIYSLHSDNNEFDLFHQWKNPTIDDFEDTHVIGVSNGLVCLASGKSLEFILWNPIIQKYVCLPLMERTWDEYLCCVGFGFDRTNNDFKIVSIIHNDIPGKFKFDSVWIFSYVTWSWKRLTCSALSCQFLGDPSILFNGMLHWYVSYVEDNVHKYNFILTFDLTHEVFGEISIPDMDVFHPECIDKWLSTNTTCPVYRANLVPHLDQPVHRLPDIVDLEAQKDAVAVEPQPEPQHTVEVDPELAESDVVCLYQTEKQNRTQVSRLSRARRFPRSHSTEHSLV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1779 392 ProSiteProfiles F-box domain profile. 28 75 IPR001810 GO:0005515
Mibi02g1779 392 PANTHER BNACNNG10540D PROTEIN 32 285 - -
Mibi02g1779 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 324 IPR013083 -
Mibi02g1779 392 Gene3D - 26 85 - -
Mibi02g1779 392 SMART fbox_2 34 74 IPR001810 GO:0005515
Mibi02g1779 392 MobiDBLite consensus disorder prediction 371 392 - -
Mibi02g1779 392 Pfam F-box domain 32 70 IPR001810 GO:0005515
Mibi02g1779 392 SUPERFAMILY F-box domain 29 121 IPR036047 GO:0005515
Mibi02g1779 392 SUPERFAMILY RING/U-box 287 311 - -
Mibi02g1779 392 TIGRFAM F_box_assoc_1: F-box protein interaction domain 147 282 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1779 Mibi-ChrMibi02 18349130 18353864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1779 283 392 Rapid Response to Elicitors AT3G05200 37.168 4.36e-09 55.8