LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g1637	ATGGCGGTCGAAACCCTTCAGCTTCTTCGTCGCGATTCCTTCTCCGATCCTCCGCCTCCGCCTCCGCCGAAAACCCCTCCATCCTCTAAGTCGAATCAGAGCCATTTCAGAGGCGTACGGAAGCGTCCATGGGGGCGATTCGCCGCAGAGATCCGCGACCCCTGGAAGAAGACTCGCAAATGGCTCGGCACCTTCGATACCGCCGAGGAAGCCGCTCGAGCCTACGATCACGCCGCCAGATCCCTCCGTGGCCCCACCGCCAAGACCAACTTCCCTCCCCCTCTCCCTCCTTATGGTGCCTTCTGGGTGAGATCGGAGATTGTGAATGTGGTTGTGGTCAAACAACACAAGAAACCGTTCTTGTTCGATCTCAATCAACCACCGCCTCTCTTCTGA	396	0.5833	MAVETLQLLRRDSFSDPPPPPPPKTPPSSKSNQSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDHAARSLRGPTAKTNFPPPLPPYGAFWVRSEIVNVVVVKQHKKPFLFDLNQPPPLF	131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g1637	131	SUPERFAMILY	DNA-binding domain	34	93	IPR016177	GO:0003677
	Mibi02g1637	131	PRINTS	Ethylene responsive element binding protein signature	36	47	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	PRINTS	Ethylene responsive element binding protein signature	58	74	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	Gene3D	AP2/ERF domain	34	93	IPR036955	GO:0003700\|GO:0006355
	Mibi02g1637	131	MobiDBLite	consensus disorder prediction	14	28	-	-
	Mibi02g1637	131	Pfam	AP2 domain	34	84	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	CDD	AP2	34	92	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	ProSiteProfiles	AP2/ERF domain profile.	35	92	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	28	104	-	-
	Mibi02g1637	131	SMART	rav1_2	35	98	IPR001471	GO:0003700\|GO:0006355
	Mibi02g1637	131	MobiDBLite	consensus disorder prediction	1	43	-	-
	Mibi02g1637	131	FunFam	Ethylene-responsive transcription factor 2	34	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g1637	Mibi-ChrMibi02	16590578	16590973	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g1637	33	94	AP2-EREBP Transcription Factor Family	AT5G44210	82.258	2.04e-31	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi02g1637		AP2	5.8e-14	CL0081