Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1601 ATGTCTTCGCCGTCAACGAAGAAGCCATCATCATGCCCAGATTGGGATTTTTGGCATGAAACATTTGATCCCTTCCTGGCCTCTTCATCATCATCAAGCGATGATCAACTTCATGGACACCCTTTCCATGATTATCTCTGCTTTGACATGATCGAAAGGGAGGCGGCGAATCAAGTGCCGGCGAGTTGGGAAGCCATGGAAGGAAGGAAGATAGTGGAGGAAAAAACATACATAGGGGTGAGGAAGAGGCCTTGGGGAAAATTTGCTGCAGAGATAAGAGACACTACAAGGAATGGTGTCAGAGTCTGGCTGGGGACTTTCGAGAGTGCAGAGGAGGCTGCTTTGGCCTATGACCAAGCTGCATTCACCATGAGAGGCTCCAACGCTGTTCTTAATTTTCCAGTTCAGAAGGTGAAAGACTCTCTCCAACACATCAATATGTATGGTTGCAACAAAGGGTGTTCACCTGCTTTAGCACTCAAAGAGAGACACTACCTCCAAAGGAAACTGTCTTCCAAGGCTAAGAAAGGCAAATCCAAACAGCAATCAGATGTGGTGGTGCTAGAAGACTTGGGTGTTGAATATCTGGAGCAACTTCTCGCCATATCTGATCAAACTACTTCAAGTTAG 630 0.4651 MSSPSTKKPSSCPDWDFWHETFDPFLASSSSSSDDQLHGHPFHDYLCFDMIEREAANQVPASWEAMEGRKIVEEKTYIGVRKRPWGKFAAEIRDTTRNGVRVWLGTFESAEEAALAYDQAAFTMRGSNAVLNFPVQKVKDSLQHINMYGCNKGCSPALALKERHYLQRKLSSKAKKGKSKQQSDVVVLEDLGVEYLEQLLAISDQTTSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1601 209 CDD AP2 77 136 IPR001471 GO:0003700|GO:0006355
Mibi02g1601 209 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Mibi02g1601 209 PANTHER DNA-BINDING DOMAIN 55 201 IPR044808 GO:0003700|GO:0009873
Mibi02g1601 209 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Mibi02g1601 209 FunFam Ethylene-responsive transcription factor 2 75 136 - -
Mibi02g1601 209 Gene3D AP2/ERF domain 75 136 IPR036955 GO:0003700|GO:0006355
Mibi02g1601 209 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Mibi02g1601 209 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Mibi02g1601 209 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Mibi02g1601 209 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1601 Mibi-ChrMibi02 16038300 16038929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1601 74 206 AP2-EREBP Transcription Factor Family AT3G23240 59.420 1.05e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi02g1601 AP2 8.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1601 02 16038300 16038929 Mibi06g2405 06 44271497 44273089 CCT
Mibi02g1601 02 16038300 16038929 Mibi02g1601 02 16038300 16038929 ECH