Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1588 ATGCATATTGCTGAAGGTCAAACAGATACAGCTTCTGTAAAATGTCTTGTCAACAGCATTTCTCGATTTGTCCATTTGGTTTCTTGCCAAACAATGAAACCTATGCCATTTCAGAAGAACTATAATCATATGGTTGGTGTGTTAAAGCGTTTGAAACCGGTGCTTGATGATGTTATAGATTGCAAAACTTACTTGGATGATAATTTATGTAAAGAGTGTGAAGAATTGGATGCGGCAGTTAATGAAGCTCGAGAGTTCTTGGAAAATTGGAGCTCGAAGAGAAGCAAGATTCTAAGTGTTCTGCGAAGTGGGTCATTGTTAATGAAAATACAGATATCCTCAGTTGAAATTTGTCACTTGATATTTAGATCGCTGCAGTCGCCTCCACCTACTTCAGTTTTGGCTACTCTTGAGAACTATTTGCAGGAACTTAGATGTTTGAAGAAGGAACCAGCCACAGGCTATATAGAAGAGGCATTGGCAAATCATAGAGAAAATATTGAACCTCACAGTGAAAATTTAAAGAAAATCATTGAGTTACTTGGATTGATGGCAAACATGGAACTCATGAGAGAAAGTATTGCTGTGGAAAAGGAAAGAGTGAGTATTGAAGTCAAGAAATCAAAAGCGGAATTGGATGAAATTAATACAATTGTGGGTCTTGTCTGCAGTTTACGTGATTATGTAATTAGATTTGAGCGCCCCATAGTCAAAAGTGGCCTCTCAATTCCTTCGTACTTTATCTGTCCTTTATCATTGGAACTCATGGTGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGATAGGATGTCCGTCCAAAAATGGCTTGATCATGGGCTGACTATTTGTCCAAAGACTCATCAGAGACTTGCTCACACAAACCTCATTCCTAATTACACTGTCAAGGCTATGGTAGTAAATTGGTGTGAGGAAAATAATGTCAGACTTCCCAGTAACTCTGAGTCCAATAATGTGAAACCCCCCATAGATCATCTATTGCCCCAAGATTTAGCTCGTTCATGTAGTTTTGGGTCTGTACATAGTAGCAATTCCACATCAAGATCATCTCTTCAAATTGGAAATTCACTTGAGAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCTATGGTTGCCAGAGCACAGAGATAGAAAAAATTGAGCAACAATCTCCTGCTCCTTCCTATATTTATAGTAGAAGTGAATCATTCTCAAGCTCCATTTCTAGTACGGACTGTACACATCCTGTTTCAAAAGAAGCATCGGAGATAGTTAATAAGCAAGAAGATGTAAAGGAATTGTCTGGAGAAACCACTAAGGGGCCTGCTGCTCCTGCAAATAATGAATCTGGTTCTTCTCCTTGTTTATCAGGGAAGCAATTTCAAGGCCCTAGATCAAACTTAGGAGAAACAGAGAATAGAAATAATAATAGCAGCCAGTCGAAAGTGCATTCCCTTCCTGTTTGCAATTCGGGATATGATGAGTCGACATCGACATCCTATGTCAATAAGTTGATTGAAGATCTCCACAGTCAATCCAATGAATTGCAGACTAAGGCCGCCGAAGAGTTGAGGCTTCTTTCAAAGATCAATGTGGAAAACCGAATCATGATAGGGAGGTGCGGGGCTATCACACCTTTACTTTCACTACTGTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCTTTGCTGAATTTGTCCATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCAATTGAACCACTTATTCATGTTCTGAAAACAGGAAATGATGGGGCCAAGGAGAATTCTGCGGCAGCTCTATTTAGCCTTTCTGTGATAGAACACTGTAAGGCAATAATCGGTCAATCTGGAGCAGTCAAAGCCTTGGTTGATCTCCTTGGCTCGGGAACTCTTAGAGGAAAGAAAGATGCTGCTACTGCTTTGTTTAACCTATCAATATGTCACGAGAATAAAGCTCGAATTGTTCAAGCTGGAGCTGTGAAACATCTGGTTCAGTTAATGAACCCTGCTGCTGGAATGGTTGACAAGGCTGTTGCTCTTCTGGCAAACTTGTCAACAATTGCAGAGGGGCGATTAGCAATTGCTAGGGAGGGGGGTATCCCCTTATTAGTTGAGTTTGTTGATTCCGGTTCCCAAAGGGGAAAAGAAAATGCTGCATCCATTCTCTTGCAATTATGCCTTCATAATACAAAGTTTTGTACTATGGTTCTGCAAGAAGGAGCAGTACCTCCGTTGGTTGCACTATCTCAGTCCGGTACACCAAGGGCAAAGGAAAAGGCACAACAGCTTCTAAGCCATTTTCGTTGTCAACGAGAAGGTGCTACAGGGAAGGGAAATGCTTGA 2373 0.4079 MHIAEGQTDTASVKCLVNSISRFVHLVSCQTMKPMPFQKNYNHMVGVLKRLKPVLDDVIDCKTYLDDNLCKECEELDAAVNEAREFLENWSSKRSKILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLATLENYLQELRCLKKEPATGYIEEALANHRENIEPHSENLKKIIELLGLMANMELMRESIAVEKERVSIEVKKSKAELDEINTIVGLVCSLRDYVIRFERPIVKSGLSIPSYFICPLSLELMVDPVIVASGQTYDRMSVQKWLDHGLTICPKTHQRLAHTNLIPNYTVKAMVVNWCEENNVRLPSNSESNNVKPPIDHLLPQDLARSCSFGSVHSSNSTSRSSLQIGNSLEKQKGDISSRLSGESYGCQSTEIEKIEQQSPAPSYIYSRSESFSSSISSTDCTHPVSKEASEIVNKQEDVKELSGETTKGPAAPANNESGSSPCLSGKQFQGPRSNLGETENRNNNSSQSKVHSLPVCNSGYDESTSTSYVNKLIEDLHSQSNELQTKAAEELRLLSKINVENRIMIGRCGAITPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIEHCKAIIGQSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKARIVQAGAVKHLVQLMNPAAGMVDKAVALLANLSTIAEGRLAIAREGGIPLLVEFVDSGSQRGKENAASILLQLCLHNTKFCTMVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRCQREGATGKGNA 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1588 790 MobiDBLite consensus disorder prediction 345 378 - -
Mibi02g1588 790 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Mibi02g1588 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 575 615 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 657 696 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 697 737 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 534 574 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 739 779 IPR000225 GO:0005515
Mibi02g1588 790 SMART arm_5 616 656 IPR000225 GO:0005515
Mibi02g1588 790 SUPERFAMILY ARM repeat 497 777 IPR016024 -
Mibi02g1588 790 MobiDBLite consensus disorder prediction 411 492 - -
Mibi02g1588 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Mibi02g1588 790 CDD RING-Ubox_PUB 247 289 IPR045210 -
Mibi02g1588 790 Gene3D - 488 784 IPR011989 -
Mibi02g1588 790 PANTHER U BOX DOMAIN-CONTAINING 36 778 - -
Mibi02g1588 790 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
Mibi02g1588 790 SUPERFAMILY RING/U-box 241 317 - -
Mibi02g1588 790 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Mibi02g1588 790 Pfam Armadillo/beta-catenin-like repeat 658 695 IPR000225 GO:0005515
Mibi02g1588 790 Pfam Armadillo/beta-catenin-like repeat 618 655 IPR000225 GO:0005515
Mibi02g1588 790 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Mibi02g1588 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 317 IPR013083 -
Mibi02g1588 790 FunFam RING-type E3 ubiquitin transferase 488 783 - -
Mibi02g1588 790 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Mibi02g1588 790 MobiDBLite consensus disorder prediction 425 439 - -
Mibi02g1588 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Mibi02g1588 790 MobiDBLite consensus disorder prediction 444 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1588 Mibi-ChrMibi02 15935914 15940171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1588 9 790 U-box Gene Family AT3G54790 52.911 0.0 720