Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1560 ATGCATGTCGAAACGATGCACGGAACTATTAGAATCAAAGTGCAGCGCTTAAGCCGTCCACGTTCACATCTCCTTTTAAATCGCGGCTCCTTTCACGAGACCGGCGTCTCTCATAAATCATTTCTCTCTCTCTCTCTGACTGAGTCGACTGGACCTTTACTGAAAACGGAAAGCACTGTTCATTCGCAGTCCAGTCATTGTGTGAGGCTCGACTTCTTCTCCGATACGCTAATGGAGGACTCTGGGAAACATAGCACCAACACTAAATTCTTTAACCCATGGATGCTTCAGTTCCAAAAAATGGGTCTTGAGCTTAAGTGCCCTCTCTGCTTAAACTTGTTCAAAAGGCCCATGTTACTTCCATGCAACCACATATTCTGCAGCCCCTGCATAGTTGATTGCTCAAGGCCAACTTCAGAATGTGCCGTCTGTAATATTCATTATGCTGAAAGAGATTTGAGGTTTCTGCCTTTTGTGGAAAACATGGTTGGGATTTATAAAAGCCTGGATGCTGCCTTTTATGCTAATCTATCTCAGCATCGCTCTCCTGATGGGCTTCCAGTTTTGGAGCAGGGTCAAACCTTGTTGAATGCAACTTTTAATTATAAAATGTCCAAGGAGCCATCAAAAACGTCTCCAGGAGATAATCTACATAGGGGGCAGTCAGTCTTTTCACAAACAATGGTTGAATGTGTCAAGGATCCCTTCAGTTCAGACCATTCTATGGAAGTGGATATTGGCCGGAATCATAAATATGAGAAGAGTGGTAATGTTGTGAATGGTAAAGATAAGAATTTTGAGGTTTCCTGCAAGGGAGATATTATAATGAAATGTTCCCAACTGGATGGAAGGGCCCATGAAGATGGTCTTGTGGAAATGGACACAAATCAAGTTACTCAATCTTCACTAGGGAGCCCTCCATTTTGTGATACAAAAGGTTCAGACAACGACTGCAGTGACCGGGACAGCGAGCATCTCATGCCTGCCGAGAGATTAGAAAGTTCTTCATCAAAGAGAGCAAGCAAAGAAAATGAAATGTTGGAAAAAAGGATCCAGTTGAGGTCTGAAAGCTCTGCCTCTGAAACAGAAGGTCTTGTGAGAGACCCCAAGAGACCCAAAAACCTTTCACATGACAATGATGGCATTCAACCCAATGTAACCCATCAAAGTAAGCTCTTGACTTCTGAATGTAACATGGACCTTAAACCTGGGGTTGACCTGGATTCATGTTCAAATACAAGCATATGTTCTTTTTGCCAGTCTTTTAGAACCTCAGAGGTTACTGGGCCGATGTTGCATTATAATAAAAATGGAAATTCAGTGTCGGGAGTTGCAGCACTCCAACCGAATGTCATACATGTGCATAAAGTTTGCATTGAATGGTCACCTCAAGTGTATTTTGTTGATGAAACTGTCAAAAATTTGAAGGCTGAAGTGGCAAGGGGAGCCAAGCTAAAATGCAGTACATGTGGCCTTAAGGGGGCTGCTCTTGGCTGCTATGTTAGATCCTGTAGGAGAACTTATCATGTTCCTTGTGCAATGGAAATCTCAACTTGCCGTTGGGATAATATTGATCTAAACATAGGTTTATTCTATGGTCAGGAGGAATATCTTATGCTCTGTCCTGCTCATTCTCATGTCAAATTTCCACATGAGAAATCCAGATCTAAGAAACAGTGCTCCCAGAAGCATCCTGTGCCATCTCATTTGGAATCTAAGCCGTCTAAACCCCCAATTGTTTTGTCAGATGATGGTAAGCGTTTGATTTTCTGTGGATCTGCTCTGTCGACAGATGAAAAGATACATTTGATCAATTTCGCCAGTAAGATTGGTGCTACTGTTACCAAGTTTTGGTCGTCAGATGTGACACATGTGATTGCGGCAACTGATCCAAACGGAGCATGTGCCAGGACACTCAAAGTTCTTATGGGAATTTTAAATGGGCAATGGATTCTAAAAATGGACTGGATAACTGCAAGCATGGAAGTGATGCGTCCAGTGGAAGAAGAGCCATTTGAAATAAGTCTTGATAACTATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTCAGGACATTGGCCAACGCGCCCAAGCTATTTAGCGGCTTTAGTATGTACTTTTCTGGTGATTACATGTCAGATTATAAGGAGGATCTTGTAGACTTGGTTGTAGCAGGAGGAGGCACTGTTATGGAACGCAAGGAAGAATTACAAACAGAAGGTCACGGATGCAAGGAGGCCACAAAGCTGATTGTTTACAATCTTGATCCCCCACATGGAAGTAGGTTGGGGGATGAAGTCACAATTCTTTGGGAGAGATTAAACGAGGCAGAGGATTTAGCTGCAATCACTGGGTCACAAGTCGTTGGTCACACATGGATCTTGGAGTCAATTGCTGCATGCAAGTTACAGCCTTTTATTAGCTAG 2427 0.431 MHVETMHGTIRIKVQRLSRPRSHLLLNRGSFHETGVSHKSFLSLSLTESTGPLLKTESTVHSQSSHCVRLDFFSDTLMEDSGKHSTNTKFFNPWMLQFQKMGLELKCPLCLNLFKRPMLLPCNHIFCSPCIVDCSRPTSECAVCNIHYAERDLRFLPFVENMVGIYKSLDAAFYANLSQHRSPDGLPVLEQGQTLLNATFNYKMSKEPSKTSPGDNLHRGQSVFSQTMVECVKDPFSSDHSMEVDIGRNHKYEKSGNVVNGKDKNFEVSCKGDIIMKCSQLDGRAHEDGLVEMDTNQVTQSSLGSPPFCDTKGSDNDCSDRDSEHLMPAERLESSSSKRASKENEMLEKRIQLRSESSASETEGLVRDPKRPKNLSHDNDGIQPNVTHQSKLLTSECNMDLKPGVDLDSCSNTSICSFCQSFRTSEVTGPMLHYNKNGNSVSGVAALQPNVIHVHKVCIEWSPQVYFVDETVKNLKAEVARGAKLKCSTCGLKGAALGCYVRSCRRTYHVPCAMEISTCRWDNIDLNIGLFYGQEEYLMLCPAHSHVKFPHEKSRSKKQCSQKHPVPSHLESKPSKPPIVLSDDGKRLIFCGSALSTDEKIHLINFASKIGATVTKFWSSDVTHVIAATDPNGACARTLKVLMGILNGQWILKMDWITASMEVMRPVEEEPFEISLDNYGCQGGPKAGRLRTLANAPKLFSGFSMYFSGDYMSDYKEDLVDLVVAGGGTVMERKEELQTEGHGCKEATKLIVYNLDPPHGSRLGDEVTILWERLNEAEDLAAITGSQVVGHTWILESIAACKLQPFIS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1560 808 CDD ePHD 452 544 - -
Mibi02g1560 808 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 324 805 IPR031099 GO:0006281|GO:0006974
Mibi02g1560 808 MobiDBLite consensus disorder prediction 314 377 - -
Mibi02g1560 808 SUPERFAMILY BRCT domain 588 675 IPR036420 -
Mibi02g1560 808 SUPERFAMILY RING/U-box 99 165 - -
Mibi02g1560 808 SUPERFAMILY BRCT domain 699 806 IPR036420 -
Mibi02g1560 808 Pfam PHD-like zinc-binding domain 455 545 - -
Mibi02g1560 808 ProSiteProfiles Extended PHD (ePHD) domain profile. 413 545 IPR034732 -
Mibi02g1560 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Mibi02g1560 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 547 IPR013083 -
Mibi02g1560 808 MobiDBLite consensus disorder prediction 298 385 - -
Mibi02g1560 808 ProSiteProfiles BRCT domain profile. 695 808 IPR001357 -
Mibi02g1560 808 Pfam RING-type zinc-finger 107 137 IPR027370 -
Mibi02g1560 808 CDD BRCT_Bard1_rpt1 588 667 - -
Mibi02g1560 808 SMART ring_2 107 144 IPR001841 -
Mibi02g1560 808 Gene3D BRCT domain 696 801 IPR036420 -
Mibi02g1560 808 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Mibi02g1560 808 MobiDBLite consensus disorder prediction 554 576 - -
Mibi02g1560 808 ProSiteProfiles BRCT domain profile. 584 674 IPR001357 -
Mibi02g1560 808 FunFam Breast cancer type 1 susceptibility protein homolog 585 691 - -
Mibi02g1560 808 ProSiteProfiles Zinc finger RING-type profile. 107 145 IPR001841 -
Mibi02g1560 808 SMART BRCT_7 578 664 IPR001357 -
Mibi02g1560 808 SMART BRCT_7 697 801 IPR001357 -
Mibi02g1560 808 Pfam BRCA1 C Terminus (BRCT) domain 600 660 IPR001357 -
Mibi02g1560 808 Gene3D BRCT domain 585 690 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1560 Mibi-ChrMibi02 15476500 15484601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1560 618 731 Core DNA Replication Machinery Family AT4G02110 30.252 3.74e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1560 02 15476500 15484601 Mibi02g1560 02 15476500 15484601 ECH