Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1488 ATGTTGTTTTGGGCATTTTCGTCATTACACCTTACAAAGTTGTCGTGGAAACTTCTTCGCCCCCCCAACCAACCGCCATATCTCACAAGTCTATCTATAAATACCCAATCCCCACGCTCTCTACATTCACAATCTCATCTTCTTCTTCAACAACACTTGATTTCATATTACTCTTCGTCACGTACGTTCTCACTTTCTTCCATGAAAAGACAGATACAGAGCCTAAACACAGAGAGCTTAGATATGGCAATCTCTCTAATGCTTCTCTCGCAACCACCAACACAACAACACAAAATCCCATCTTCTTCATTGCCTCATGAATTTGAATGCAAGACCTGCAACCGCAAGTTCTCATCTTTTCAGGCGCTAGGAGGTCACAGGGCGAGCCACAAGAAACCCAGAATTGATTCCCAAACAGAGACGCAAAAACCCAATTCAGAGAAATCATTGCACGAGTGTTCTATTTGTGGTCAGAGATTCTCTCTGGGGCAAGCTTTGGGTGGCCACATGAGAAAGCACAGGGCTGCCATGAACGAAGAAGCCTCTCATCCTTCCATAAAAGAGCCTGTTCTTCCTGAAATCCCTGTTCTGAAGCGATCTAGCAGCAGCAAGAGGGTCGTCTGCTTGGATTTGAACTTAACCCCTCTAGAGAACGACTTGAAGTTGCTTTTTGGAAATAAGGCTCCTTCTATTAATCTTTCCTTGTGCTGA 711 0.443 MLFWAFSSLHLTKLSWKLLRPPNQPPYLTSLSINTQSPRSLHSQSHLLLQQHLISYYSSSRTFSLSSMKRQIQSLNTESLDMAISLMLLSQPPTQQHKIPSSSLPHEFECKTCNRKFSSFQALGGHRASHKKPRIDSQTETQKPNSEKSLHECSICGQRFSLGQALGGHMRKHRAAMNEEASHPSIKEPVLPEIPVLKRSSSSKRVVCLDLNLTPLENDLKLLFGNKAPSINLSLC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1488 236 Gene3D Classic Zinc Finger 106 173 - -
Mibi02g1488 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Mibi02g1488 236 MobiDBLite consensus disorder prediction 123 148 - -
Mibi02g1488 236 SMART c2h2final6 151 173 IPR013087 -
Mibi02g1488 236 SMART c2h2final6 108 130 IPR013087 -
Mibi02g1488 236 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Mibi02g1488 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Mibi02g1488 236 PANTHER ZINC FINGER PROTEIN ZAT5 71 219 - -
Mibi02g1488 236 SUPERFAMILY beta-beta-alpha zinc fingers 108 173 IPR036236 -
Mibi02g1488 236 Pfam C2H2-type zinc finger 108 133 - -
Mibi02g1488 236 Pfam C2H2-type zinc finger 151 175 - -
Mibi02g1488 236 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1488 Mibi-ChrMibi02 14850777 14851615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1488 68 235 C2H2 Transcription Factor Family AT2G37430 48.619 7.50e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g1488 zf-C2H2_6 1.3e-09 CL0361