Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1351 ATGGAGGTGACAGGGCAGGAGGAACTTGTGGTGTGGAATAAGGATCAACAACATCAAGCCCAAGTCATGATGAAGGGAAAGCGCACCAAGCGTTCAAGGCTGCCTTCTCCTCTCAGGCTATCCATGGCTTCTTCTGCAACCACCACCGACGACCATTCCGGCGGATCATCTTCCATAGTAGACATGGCTGCCACAACCTCCACAGATCAATTAAGGGTAGTGAGCACAGAAGAAGAGGATATGGCTCATTGTTTGATCCTTCTTGCTCAAGGACATACACGTCGTCATCATGATCATCAGCCTATTTCCCAAAACAAAAATGATGCTAATAATAATAAGGCTTCATCGGGGCTATATGTTTATCAGTGCAAGACTTGCGATCGATGCTTCCCTTCTTTTCAAGCTCTTGGTGGACACAGAGCCAGCCATAAGAAACCAAAGAACAACATCAATAATTCTGAAGAAAAGATTCAATCTTCGGTTGCATTTTCAAACGAAGAGTCTCATCATCATCATCAACATGAATCCTATGACCCCACTGGTACAAGTTTCGTCCTTTCCTTGCAGATACCAAATGGTAGTAGCAACACTAATAATAATAATAACAACAAGTCTTCCAAAGTTCATGAGTGTTCTATTTGTGGGGCCGAGTTTACTTCTGGGCAAGCTTTAGGGGGTCATATGCGGCGTCACAGAACATTGATGAACAATTCTGCTTCCACATGTACGACGAGCACCGAGAACAACAATTCTCTACTCCAGCAAGTCACCACCAACAAGCCATCTAAGAATGCTTTGAAGTTGGATTTGAATCTTCCTGCACCAGAAGATGATCACAGAGAATCCAAGTTGCCTTTTCAGCCTAAAGATAGTGTTCTTGTTTTCTCTGCTTCCTCTTTGGTGGATTGCCATTATTGA 918 0.4368 MEVTGQEELVVWNKDQQHQAQVMMKGKRTKRSRLPSPLRLSMASSATTTDDHSGGSSSIVDMAATTSTDQLRVVSTEEEDMAHCLILLAQGHTRRHHDHQPISQNKNDANNNKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKNNINNSEEKIQSSVAFSNEESHHHHQHESYDPTGTSFVLSLQIPNGSSNTNNNNNNKSSKVHECSICGAEFTSGQALGGHMRRHRTLMNNSASTCTTSTENNNSLLQQVTTNKPSKNALKLDLNLPAPEDDHRESKLPFQPKDSVLVFSASSLVDCHY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1351 305 Gene3D Classic Zinc Finger 188 261 - -
Mibi02g1351 305 MobiDBLite consensus disorder prediction 160 206 - -
Mibi02g1351 305 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Mibi02g1351 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Mibi02g1351 305 PANTHER ZINC FINGER PROTEIN ZAT5 33 283 - -
Mibi02g1351 305 MobiDBLite consensus disorder prediction 24 61 - -
Mibi02g1351 305 SUPERFAMILY beta-beta-alpha zinc fingers 120 231 IPR036236 -
Mibi02g1351 305 Pfam C2H2-type zinc finger 120 146 - -
Mibi02g1351 305 Pfam C2H2-type zinc finger 208 232 - -
Mibi02g1351 305 SMART c2h2final6 209 231 IPR013087 -
Mibi02g1351 305 SMART c2h2final6 121 143 IPR013087 -
Mibi02g1351 305 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Mibi02g1351 305 MobiDBLite consensus disorder prediction 178 206 - -
Mibi02g1351 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 231 IPR013087 -
Mibi02g1351 305 MobiDBLite consensus disorder prediction 38 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1351 Mibi-ChrMibi02 13418994 13419911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1351 22 305 C2H2 Transcription Factor Family AT5G03510 42.905 2.01e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g1351 zf-C2H2_6 6.3e-10 CL0361