Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1343 ATGGCATTGCCTTTGCGAGCCCTCTTGGCCTCATTTTTTGTGCTCTCTGTTGTTATCATTGCTCTTTGGCTTCCTCACGTTAATGCGGAAGACGCTAATGATGTAGGAAGACTCAGTATGGCTGCTCTTTCCAAGAGATTGTATAAGCCCAGTCTTAATTGGAAGCAAGCTTATGCCACTTTCTATGAAGGAGGCTCTGGAACATATGGAGGAGCATGTGGGTACGAGGATGTAGGGAAAGCAGGATATGGACTTCAAACGGCAGCTTTGAGCCAAGTTCTGTTCAACAATGGACTCACTTGTGGTGCATGCTACGAAATCCGATGCGTGAACTCACAATGGTGTAAACATATGAGACGTTCCATTATAGTGACGGCCACAGATTATTGTCCTCCCAACTTCAACCTCCCAAACAACAATGGTGGATGGTGCAACCCTCCCCGCGAGCACTTCGACTTAGCAAAGCCTGCCTTCCTTGACATCGCCGAGTACCAAGGTGGCATTGTCCCCATCAACTATCGCAGGGTAGCGTGCAAGAGGCAAGGAGGCATTCGGTTCACCATAAGTGGGAATCCTTACTTCTACCTGGTGTCAGTGTGGAATGTTGGAGGAGCAGGGGATGTGGTAGGTGTGCAAGTGAAGGGAAGTAAGAAGGTGAAATGGACAGTTATGAAGAGGAATTGGGGTCAGAAGTGGGAGACTAATGCAATGTTACTTGGAGAGTCTTTGACCTTCCGTGTTAGAACCAGTGATCGAAGGAGCTCCACTTCCTGGAACGTGGCTCCTCATAATTGGCAGTTTGGTGTTACATACGAAGGCAAAAACTTCAAGTGA 834 0.4784 MALPLRALLASFFVLSVVIIALWLPHVNAEDANDVGRLSMAALSKRLYKPSLNWKQAYATFYEGGSGTYGGACGYEDVGKAGYGLQTAALSQVLFNNGLTCGACYEIRCVNSQWCKHMRRSIIVTATDYCPPNFNLPNNNGGWCNPPREHFDLAKPAFLDIAEYQGGIVPINYRRVACKRQGGIRFTISGNPYFYLVSVWNVGGAGDVVGVQVKGSKKVKWTVMKRNWGQKWETNAMLLGESLTFRVRTSDRRSSTSWNVAPHNWQFGVTYEGKNFK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1343 277 Gene3D - 182 276 IPR036749 -
Mibi02g1343 277 SUPERFAMILY Barwin-like endoglucanases 53 201 IPR036908 -
Mibi02g1343 277 Gene3D - 39 179 IPR036908 -
Mibi02g1343 277 PANTHER EXPANSIN-A15 24 276 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Mibi02g1343 277 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Mibi02g1343 277 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576
Mibi02g1343 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Mibi02g1343 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Mibi02g1343 277 Pfam Lytic transglycolase 87 173 IPR009009 -
Mibi02g1343 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 183 IPR007112 -
Mibi02g1343 277 Pfam Expansin C-terminal domain 184 262 IPR007117 -
Mibi02g1343 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 273 IPR007117 -
Mibi02g1343 277 SUPERFAMILY PHL pollen allergen 180 273 IPR036749 -
Mibi02g1343 277 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 158 171 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Mibi02g1343 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Mibi02g1343 277 SMART dpbb_1 87 173 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1343 Mibi-ChrMibi02 13343626 13345978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1343 53 277 Expansin Gene Family AT3G55500 61.842 3.78e-103 299